Index (Credal Model Algorithms 0.2.2 API)

A B C D E F G H I J K L M N O P Q R S T U V W X Z
All Classes All Packages

A

AbellanEntropy - Class in ch.idsia.crema.entropy
AbellanEntropy() - Constructor for class ch.idsia.crema.entropy.AbellanEntropy
AbstractSearch<M,S> - Class in ch.idsia.crema.search.impl: A common implementation of a search algorith offering observers, progress and stats.
AbstractSearch() - Constructor for class ch.idsia.crema.search.impl.AbstractSearch
AbstractSet - Class in ch.idsia.crema.factor.credal.set
AbstractSet() - Constructor for class ch.idsia.crema.factor.credal.set.AbstractSet
AbstractSet(Strides) - Constructor for class ch.idsia.crema.factor.credal.set.AbstractSet
ACCEPTABLE_LEVEL - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
add(double[]) - Method in class ch.idsia.crema.factor.credal.set.VertexSet
add(double[][], double[]) - Static method in class ch.idsia.crema.utility.hull.LPConvexHull
add(F) - Method in class ch.idsia.crema.inference.ve.FactorQueue
add(F, int) - Method in interface ch.idsia.crema.model.change.DomainChange: Add a variable to the domain of a Factor.
add(F, int) - Method in class ch.idsia.crema.model.change.NullChange
add(F, int) - Method in class ch.idsia.crema.model.change.VoidChange
add(F, int, F, int) - Method in interface ch.idsia.crema.factor.algebra.bayesian.BayesianOperation
add(F, int, F, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.LogBayesianOperation
add(F, int, F, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.SimpleBayesianOperation
addAll(List<F>) - Method in class ch.idsia.crema.inference.ve.FactorQueue
addBayesVertex(BayesianDefaultFactor) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
addBayesVertex(BayesianFactor) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
addBayesVertices(List<BayesianDefaultFactor>) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
addBounds(String, double, double) - Method in class ch.idsia.crema.factor.symbolic.serialize.MOD: Add a variable with a bound to the mod var section
addConstraint(double[], Relationship, double) - Method in class ch.idsia.crema.factor.credal.linear.extensive.ExtensiveHalfspaceFactor
addConstraint(LinearConstraint) - Method in class ch.idsia.crema.factor.credal.set.HCredalSet: Add a constraint over the domain of the set.
addConstraint(LinearConstraint, int...) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
addEdge(int, int) - Method in class ch.idsia.crema.inference.fe.EliminationTree: Add a new edge between two nodes in this tree.
addEquality(String, String) - Method in class ch.idsia.crema.factor.symbolic.serialize.MOD
addIntermediateModels(GraphicalModel<F>) - Method in class ch.idsia.crema.learning.ExpectationMaximization
addition(BayesianAbstractFactor, BayesianAbstractFactor) - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorUtilities: This generic implementation checks if the current factor is in log space and also the given one.
addition(BayesianDefaultFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: The specialized method that avoids the cast of the input variable.
addition(BayesianDefaultFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor: If the input factor is also a BayesianLogFactor, a fast algebra i used.
addLogVertex(BayesianLogFactor) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
addLogVertices(List<BayesianLogFactor>) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
addMailbox(Integer, Integer, int[]) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
addNode(int, BayesianFactor) - Method in class ch.idsia.crema.inference.fe.EliminationTree: Add a new node to this tree or overwrite an existing one with a new factor.
addParent(int, int) - Method in class ch.idsia.crema.model.graphical.DAGModel
addParent(int, int) - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
addParents(int, int...) - Method in class ch.idsia.crema.model.graphical.DAGModel
addParents(int, int[]) - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
addParentState(F, int, int) - Method in interface ch.idsia.crema.model.change.CardinalityChange: Handle changes to the factor caused by the addition of a state to a parent variable
addParentState(F, int, int) - Method in class ch.idsia.crema.model.change.NullChange
addParentState(F, int, int) - Method in class ch.idsia.crema.model.change.VoidChange
addProgressListener(ProgressListener) - Method in class ch.idsia.crema.search.impl.AbstractSearch
addProgressListener(ProgressListener) - Method in interface ch.idsia.crema.search.ISearch: Add a listener that will be informed about progresses done by the searcher.
addState(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
addState(int) - Method in interface ch.idsia.crema.model.Model: remove a specific state from a variable
addState(F, int) - Method in interface ch.idsia.crema.model.change.CardinalityChange: Update the given factor by adding a new state to the specified variable.
addState(F, int) - Method in class ch.idsia.crema.model.change.NullChange
addState(F, int) - Method in class ch.idsia.crema.model.change.VoidChange
addToSortedArray(int[], int) - Static method in class ch.idsia.crema.utility.ArraysUtil: Add the element to a sorted array.
addVariable(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
addVariable(int) - Method in interface ch.idsia.crema.model.Model: Add a new variable to the model.
addVariable(int, int) - Method in class ch.idsia.crema.model.graphical.DAGModel
addVariable(int, int) - Method in interface ch.idsia.crema.model.Model: Add a new variable to the model.
addVariables(int...) - Method in class ch.idsia.crema.model.graphical.DAGModel
addVertex(double[]) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
addVertex(double[]) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
addVertex(double[]) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexLogFactor
addVertex(double[], int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
addVertex(double[], int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
addVertices(List<double[]>) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
addVertices(List<double[]>, TIntList) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
advance() - Method in class ch.idsia.crema.utility.SeparateIndexIterator
Algorithm<F,R> - Interface in ch.idsia.crema.inference: Author: Claudio "Dna" Bonesana Project: CreMA Date: 14.02.2018 10:04
almostEquals(double[], double[], double) - Static method in class ch.idsia.crema.utility.ArraysUtil: Compare two double arrays for almost equality.
almostEquals(float[], float[], float) - Static method in class ch.idsia.crema.utility.ArraysUtil: Compare two float arrays for almost equality.
and(int...) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Requires a pre-defined Domain.
and(int[], int[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Requires a pre-defined Domain.
and(int, int) - Method in class ch.idsia.crema.core.ObservationBuilder
and(int, int) - Method in class ch.idsia.crema.core.Strides: Helper to allow concatenation of var().add().add() Insertion is sorted.
and(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor.Helper
append(double...) - Method in class ch.idsia.crema.model.io.uai.UAIWriter
append(double[], double...) - Static method in class ch.idsia.crema.utility.ArraysUtil: Append element of second to the end of base and return the new array.
append(int...) - Method in class ch.idsia.crema.model.io.uai.UAIWriter
append(int[], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil: Append element of second to the end of base and return the new array.
append(String...) - Method in class ch.idsia.crema.model.io.uai.UAIWriter
append(String[], String...) - Static method in class ch.idsia.crema.utility.ArraysUtil
apply(double[][]) - Method in interface ch.idsia.crema.utility.hull.ConvexHull: Method that applies the given convex hull method to a list of vertices.
apply(double[][]) - Method in class ch.idsia.crema.utility.hull.LPConvexHull
apply(double[][]) - Method in class ch.idsia.crema.utility.hull.QuickHull
apply(double[][]) - Method in class ch.idsia.crema.utility.hull.ReducedHull: Method that applies the given convex hull method to a list of vertices.
apply(BayesianFactor, Integer) - Method in class ch.idsia.crema.factor.convert.BayesianToExtensiveVertex
apply(BayesianFactor, Integer) - Method in class ch.idsia.crema.factor.convert.BayesianToHalfSpace
apply(BayesianFactor, Integer) - Method in class ch.idsia.crema.factor.convert.BayesianToInterval
apply(BayesianFactor, Integer) - Method in class ch.idsia.crema.factor.convert.BayesianToVertex
apply(ExtensiveLinearFactor) - Method in class ch.idsia.crema.factor.convert.ExtensiveLinearToRandomBayesian
apply(ExtensiveLinearFactor, Integer) - Method in class ch.idsia.crema.factor.convert.ExtensiveLinearToRandomBayesian
apply(IntervalFactor, Integer) - Method in class ch.idsia.crema.factor.convert.IntervalToBayesianMaxEntropy
apply(SeparateHalfspaceFactor, Integer) - Method in class ch.idsia.crema.factor.convert.HalfspaceToRandomBayesianFactor
apply(SeparateHalfspaceFactor, Integer) - Method in class ch.idsia.crema.factor.convert.HalfspaceToVertex
apply(SeparateLinearFactor) - Method in class ch.idsia.crema.factor.convert.SeparateLinearToExtensiveHalfspaceFactor
apply(SeparateLinearFactor) - Method in class ch.idsia.crema.factor.convert.SeparateLinearToRandomBayesian
apply(SeparateLinearFactor, Integer) - Method in class ch.idsia.crema.factor.convert.SeparateLinearToExtensiveHalfspaceFactor
apply(SeparateLinearFactor, Integer) - Method in class ch.idsia.crema.factor.convert.SeparateLinearToHalfspaceFactor
apply(SeparateLinearFactor, Integer) - Method in class ch.idsia.crema.factor.convert.SeparateLinearToRandomBayesian
apply(VertexFactor) - Method in class ch.idsia.crema.factor.convert.VertexToRandomBayesian
apply(VertexFactor, Integer) - Method in class ch.idsia.crema.factor.convert.SeparateVertexToExtensiveVertex
apply(VertexFactor, Integer) - Method in class ch.idsia.crema.factor.convert.VertexToInterval
apply(VertexFactor, Integer) - Method in class ch.idsia.crema.factor.convert.VertexToRandomBayesian
apply(GraphicalModel<?>) - Method in class ch.idsia.crema.inference.ve.order.MinFillOrdering
apply(GraphicalModel<?>) - Method in interface ch.idsia.crema.inference.ve.order.OrderingStrategy
apply(GraphicalModel<?>) - Method in class ch.idsia.crema.inference.ve.order.TopologicalOrder
apply(GraphicalModel<?>) - Method in class ch.idsia.crema.inference.ve.order.TopologicalOrder2
apply(GraphicalModel<?>) - Method in class ch.idsia.crema.inference.ve.order.TopologicalOrdering
apply(GraphicalModel<BayesianFactor>, int[]) - Method in class ch.idsia.crema.inference.fe.FactorElimination: Deprecated.
apply(GraphicalModel<BayesianFactor>, int[], TIntIntMap) - Method in class ch.idsia.crema.inference.fe.FactorElimination: Deprecated.
apply(S) - Method in interface ch.idsia.crema.factor.Converter: Most converter do not rely on the information about the conditioning.
apply(S, Integer) - Method in interface ch.idsia.crema.factor.Converter
applyConvexHull(ConvexHull) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
applyConvexHull(ConvexHull) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
applyConvexHull(ConvexHull) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
ApproxLP0<F extends GenericFactor> - Class in ch.idsia.crema.inference.approxlp0: Author: Claudio "Dna" Bonesana Project: crema Date: 17.08.2021 10:56
ApproxLP0() - Constructor for class ch.idsia.crema.inference.approxlp0.ApproxLP0
ApproxLP0(boolean) - Constructor for class ch.idsia.crema.inference.approxlp0.ApproxLP0
ApproxLP0(int) - Constructor for class ch.idsia.crema.inference.approxlp0.ApproxLP0
ApproxLP0(int, boolean) - Constructor for class ch.idsia.crema.inference.approxlp0.ApproxLP0
ApproxLP0(int, Inference<GraphicalModel<BayesianFactor>, BayesianFactor>) - Constructor for class ch.idsia.crema.inference.approxlp0.ApproxLP0
ApproxLP0(int, Inference<GraphicalModel<BayesianFactor>, BayesianFactor>, boolean) - Constructor for class ch.idsia.crema.inference.approxlp0.ApproxLP0
ApproxLP1<F extends GenericFactor> - Class in ch.idsia.crema.inference.approxlp1: Perform inference using ApproxLP
ApproxLP1() - Constructor for class ch.idsia.crema.inference.approxlp1.ApproxLP1
ApproxLP1(boolean) - Constructor for class ch.idsia.crema.inference.approxlp1.ApproxLP1
ApproxLP1(int) - Constructor for class ch.idsia.crema.inference.approxlp1.ApproxLP1
ApproxLP1(Map<String, ?>) - Constructor for class ch.idsia.crema.inference.approxlp1.ApproxLP1
ApproxLP1(Map<String, ?>, boolean) - Constructor for class ch.idsia.crema.inference.approxlp1.ApproxLP1
ApproxLP1(Map<String, ?>, int) - Constructor for class ch.idsia.crema.inference.approxlp1.ApproxLP1
ApproxLP1(Map<String, ?>, int, boolean) - Constructor for class ch.idsia.crema.inference.approxlp1.ApproxLP1
ApproxLP2<F extends GenericFactor> - Class in ch.idsia.crema.inference.approxlp2
ApproxLP2() - Constructor for class ch.idsia.crema.inference.approxlp2.ApproxLP2
ApproxLP2(boolean) - Constructor for class ch.idsia.crema.inference.approxlp2.ApproxLP2: By default, the preprocessing methods is just RemoveBarren.
ApproxLP2(int) - Constructor for class ch.idsia.crema.inference.approxlp2.ApproxLP2: Instead of use the optimized search, generate random networks.
ApproxLP2(int, boolean) - Constructor for class ch.idsia.crema.inference.approxlp2.ApproxLP2
ApproxLP2(Map<String, ?>) - Constructor for class ch.idsia.crema.inference.approxlp2.ApproxLP2
ApproxLP2(Map<String, ?>, boolean) - Constructor for class ch.idsia.crema.inference.approxlp2.ApproxLP2
areCompatible(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
areConnected(int, int) - Method in class ch.idsia.crema.model.graphical.DAGModel: Check if there is a path (without considereing the link directions) between 2 nodes
ArraysUtil - Class in ch.idsia.crema.utility
ArraysUtil() - Constructor for class ch.idsia.crema.utility.ArraysUtil
as(int...) - Static method in class ch.idsia.crema.core.Strides: Define a stride as a sequence of variable, state pairs.
at(int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Helper method to index multiple items in one shot.

B

Barren - Annotation Type in ch.idsia.crema.model.precondition
BAYES - ch.idsia.crema.model.io.uai.UAITypes
BayesianAbstractFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 18:43
BayesianAbstractFactor(Domain) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
BayesianAlgebra - Class in ch.idsia.crema.factor.algebra: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 14:40
BayesianAlgebra() - Constructor for class ch.idsia.crema.factor.algebra.BayesianAlgebra
BayesianAndFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 23.08.2021 14:40
BayesianAndFactor(Strides, int...) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianAndFactor: An AND factor where the true state for each parent is the higher state available.
BayesianAndFactor(Strides, int[], int[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianAndFactor: An AND factor where the true states for each parent are defined externally.
BayesianAndFactor(BayesianAndFactor, int, int) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianAndFactor: An AND factor where one variable has been filtered out (used internally during filter).
BayesianCollector - Interface in ch.idsia.crema.factor.algebra.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 21:14
BayesianDefaultFactor - Class in ch.idsia.crema.factor.bayesian: BayesianDefaultFactor
BayesianDefaultFactor(int[], int[], double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: This assumes that the data are ordered with the same order of the variables in the given domain.
BayesianDefaultFactor(Domain, double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: This assumes that the data are ordered by the given domain.
BayesianDefaultFactor(Strides, double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: This assumes that the data are ordered by the given stride.
BayesianDefaultFactor(Strides, int[], double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: This assumes that the data are ordered with the same order of the variables in the given dataDomain parameter.
BayesianDefaultFactor(BayesianFactor) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: This creates a new factor with the same domain and the data of the given factor.
BayesianDefaultFactor.Helper - Class in ch.idsia.crema.factor.bayesian
BayesianDeterministicFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 15.04.2021 18:51
BayesianDeterministicFactor(Strides, int) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianDeterministicFactor: Constructs a deterministic factor (values can only be ones or zeros) without parent variables.
BayesianDeterministicFactor(Strides, Strides, int...) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianDeterministicFactor: Constructs a deterministic factor (values can only be ones or zeros).
BayesianEntropy - Class in ch.idsia.crema.entropy: Author: Claudio "Dna" Bonesana Project: crema Date: 18.12.2020 10:38
BayesianEntropy() - Constructor for class ch.idsia.crema.entropy.BayesianEntropy
BayesianFactor - Interface in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 17.03.2021 13:18
BayesianFactorFactory - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 11:11
BayesianFactorUtilities - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 15.04.2021 18:40
BayesianFactorUtilities() - Constructor for class ch.idsia.crema.factor.bayesian.BayesianFactorUtilities
BayesianFunctionFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 18:43
BayesianFunctionFactor(Strides) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
BayesianFunctionFactor(Strides, Function<Integer, Double>) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
BayesianFunctionLogFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 20.08.2021 10:01
BayesianFunctionLogFactor(Strides, Function<Integer, Double>) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianFunctionLogFactor
BayesianLogFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 15.04.2021 18:17
BayesianLogFactor(int[], int[], double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogFactor: This assumes that the data are ordered with the same order of the variables in the given domain and not in log-space.
BayesianLogFactor(Domain, double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogFactor: This assumes that the data are ordered by the given domain and not in log-space.
BayesianLogFactor(Strides, double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogFactor: This assumes that the data are ordered by the given stride and not in log-space.
BayesianLogFactor(Strides, int[], double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogFactor: This assumes that the data are ordered with the same order of the variables in the given dataDomain and not in log-space.
BayesianLogFactor(BayesianDefaultFactor) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogFactor: This creates a new factor with the same domain and the data of the given factor.
BayesianLogFactor(BayesianFactor) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogFactor: This creates a new factor with the same domain and the data of the given factor.
BayesianLogicFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 30.09.2021 11:22
BayesianLogicFactor(Strides, int...) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: A logic factor where the true state for each parent is the higher state available.
BayesianLogicFactor(Strides, int[], int[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: A logic factor where the true states for each parent are defined externally.
BayesianLogicFactor(BayesianLogicFactor) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: Copy constructor.
BayesianLogicFactor(BayesianLogicFactor, int, int) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: A logic factor where one variable has been filtered out (can be used during filter).
BayesianNetwork - Class in ch.idsia.crema.model.graphical: Author: Claudio "Dna" Bonesana Project: CreMA Date: 12.02.2018 10:57
BayesianNetwork() - Constructor for class ch.idsia.crema.model.graphical.BayesianNetwork
BayesianNetwork(DAGModel<BayesianFactor>) - Constructor for class ch.idsia.crema.model.graphical.BayesianNetwork
BayesianNetworkSampling - Class in ch.idsia.crema.inference.sampling: Author: Claudio "Dna" Bonesana Project: crema Date: 27.11.2020 17:01
BayesianNetworkSampling() - Constructor for class ch.idsia.crema.inference.sampling.BayesianNetworkSampling
BayesianNoisyOrFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 16.08.2021 15:33
BayesianNoisyOrFactor(Strides, int[], double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor: A Noisy OR factor where the true state for each parent is the higher state available.
BayesianNoisyOrFactor(Strides, int[], int[], double[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor: A Noisy OR factor where the true states for each parent are defined externally.
BayesianNoisyOrFactor(BayesianNoisyOrFactor, int, int) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor: A Noisy OR factor that has been filtered over the given variable and its state.
BayesianNotFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 23.08.2021 14:40
BayesianNotFactor(Strides, int) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianNotFactor
BayesianNotFactor(Strides, int, int) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianNotFactor
BayesianOperation<F extends BayesianFactor> - Interface in ch.idsia.crema.factor.algebra.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 11:43
BayesianOrFactor - Class in ch.idsia.crema.factor.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 16.08.2021 15:33
BayesianOrFactor(Strides, int...) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianOrFactor: An OR factor where the true state for each parent is the higher state available.
BayesianOrFactor(Strides, int[], int[]) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianOrFactor: An OR factor where the true states for each parent are defined externally.
BayesianOrFactor(BayesianOrFactor, int, int) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianOrFactor
BayesianToExtensiveVertex - Class in ch.idsia.crema.factor.convert
BayesianToExtensiveVertex() - Constructor for class ch.idsia.crema.factor.convert.BayesianToExtensiveVertex
BayesianToHalfSpace - Class in ch.idsia.crema.factor.convert
BayesianToHalfSpace() - Constructor for class ch.idsia.crema.factor.convert.BayesianToHalfSpace
BayesianToInterval - Class in ch.idsia.crema.factor.convert
BayesianToInterval() - Constructor for class ch.idsia.crema.factor.convert.BayesianToInterval
BayesianToVertex - Class in ch.idsia.crema.factor.convert
BayesianToVertex() - Constructor for class ch.idsia.crema.factor.convert.BayesianToVertex
BayesUAIParser - Class in ch.idsia.crema.model.io.uai: Parser for Bayesian Networks in UAI format
BayesUAIParser(String) - Constructor for class ch.idsia.crema.model.io.uai.BayesUAIParser
BayesUAIParser(List<String>) - Constructor for class ch.idsia.crema.model.io.uai.BayesUAIParser
BayesUAIWriter - Class in ch.idsia.crema.model.io.uai
BayesUAIWriter(BayesianNetwork, String) - Constructor for class ch.idsia.crema.model.io.uai.BayesUAIWriter
BeliefPropagation<F extends OperableFactor<F>> - Class in ch.idsia.crema.inference.bp: Author: Claudio "Dna" Bonesana Project: CreMA Date: 14.02.2018 10:03
BeliefPropagation() - Constructor for class ch.idsia.crema.inference.bp.BeliefPropagation
BeliefPropagation(Boolean) - Constructor for class ch.idsia.crema.inference.bp.BeliefPropagation
best() - Method in class ch.idsia.crema.search.impl.AbstractSearch
best() - Method in interface ch.idsia.crema.search.ISearch: Returns the best solution found up to this moment.
bestScore - Variable in class ch.idsia.crema.search.impl.AbstractSearch
bestSolution - Variable in class ch.idsia.crema.search.impl.AbstractSearch
BIFObject - Class in ch.idsia.crema.model.io.bif: Author: Claudio "Dna" Bonesana Project: crema Date: 25.01.2021 09:38
BIFObject() - Constructor for class ch.idsia.crema.model.io.bif.BIFObject
BIFParser - Class in ch.idsia.crema.model.io.bif: Author: Claudio "Dna" Bonesana Project: crema Date: 25.01.2021 09:22
BIFParser(String) - Constructor for class ch.idsia.crema.model.io.bif.BIFParser
BinarizeEvidence<F extends GenericFactor> - Class in ch.idsia.crema.preprocess: Multiple evidences can be reduced to a single binary variable by adding deterministic nodes as children of the observed nodes.
BinarizeEvidence() - Constructor for class ch.idsia.crema.preprocess.BinarizeEvidence
BinarizeEvidence(int) - Constructor for class ch.idsia.crema.preprocess.BinarizeEvidence
BinarizeEvidence(CreateFactor) - Constructor for class ch.idsia.crema.preprocess.BinarizeEvidence
BinarizeEvidence(CreateFactor, int) - Constructor for class ch.idsia.crema.preprocess.BinarizeEvidence
bounds(double, double, int, int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
boundsFor(int...) - Method in class ch.idsia.crema.factor.credal.set.IntervalSet
BoundsHelper(int...) - Constructor for class ch.idsia.crema.factor.credal.set.IntervalSet.BoundsHelper
build() - Method in class ch.idsia.crema.model.io.uai.BayesUAIParser
build() - Method in class ch.idsia.crema.model.io.uai.EvidUAIParser
build() - Method in class ch.idsia.crema.model.io.uai.HCredalUAIParser
build() - Method in class ch.idsia.crema.model.io.uai.UAIParser
build() - Method in class ch.idsia.crema.model.io.uai.VCredalUAIParser
buildConstraints(boolean, boolean, double[][], double[], Relationship...) - Static method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorUtils
buildModel(boolean, BayesianNetwork...) - Static method in class ch.idsia.crema.model.graphical.VerticesModel: Build a credal network from a set of precise models

C

C_STYLE - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt: Use C index style for iRow and jCol vectors
canAddVector(List<double[]>, double[]) - Method in class ch.idsia.crema.factor.algebra.OnlineConvexHullAlgebra
canVisit(int, int) - Method in class ch.idsia.crema.search.SearchOperation
cardinalities - Variable in class ch.idsia.crema.model.graphical.DAGModel: The number of states/cardinalities of a variable
cardinalities - Variable in class ch.idsia.crema.model.io.uai.NetUAIParser
CardinalityChange<F extends GenericFactor> - Interface in ch.idsia.crema.model.change
cardinalityChanger - Variable in class ch.idsia.crema.model.graphical.DAGModel
ch.idsia.crema - package ch.idsia.crema
ch.idsia.crema.core - package ch.idsia.crema.core
ch.idsia.crema.data - package ch.idsia.crema.data
ch.idsia.crema.entropy - package ch.idsia.crema.entropy
ch.idsia.crema.factor - package ch.idsia.crema.factor
ch.idsia.crema.factor.algebra - package ch.idsia.crema.factor.algebra
ch.idsia.crema.factor.algebra.bayesian - package ch.idsia.crema.factor.algebra.bayesian
ch.idsia.crema.factor.algebra.collectors - package ch.idsia.crema.factor.algebra.collectors
ch.idsia.crema.factor.algebra.vertex - package ch.idsia.crema.factor.algebra.vertex
ch.idsia.crema.factor.bayesian - package ch.idsia.crema.factor.bayesian
ch.idsia.crema.factor.convert - package ch.idsia.crema.factor.convert
ch.idsia.crema.factor.credal - package ch.idsia.crema.factor.credal
ch.idsia.crema.factor.credal.linear - package ch.idsia.crema.factor.credal.linear
ch.idsia.crema.factor.credal.linear.extensive - package ch.idsia.crema.factor.credal.linear.extensive
ch.idsia.crema.factor.credal.linear.interval - package ch.idsia.crema.factor.credal.linear.interval
ch.idsia.crema.factor.credal.linear.separate - package ch.idsia.crema.factor.credal.linear.separate
ch.idsia.crema.factor.credal.set - package ch.idsia.crema.factor.credal.set
ch.idsia.crema.factor.credal.vertex.extensive - package ch.idsia.crema.factor.credal.vertex.extensive
ch.idsia.crema.factor.credal.vertex.generator - package ch.idsia.crema.factor.credal.vertex.generator
ch.idsia.crema.factor.credal.vertex.separate - package ch.idsia.crema.factor.credal.vertex.separate
ch.idsia.crema.factor.symbolic - package ch.idsia.crema.factor.symbolic
ch.idsia.crema.factor.symbolic.serialize - package ch.idsia.crema.factor.symbolic.serialize
ch.idsia.crema.inference - package ch.idsia.crema.inference
ch.idsia.crema.inference.approxlp0 - package ch.idsia.crema.inference.approxlp0
ch.idsia.crema.inference.approxlp1 - package ch.idsia.crema.inference.approxlp1: Approximate credal network updating by linear programming.
ch.idsia.crema.inference.approxlp2 - package ch.idsia.crema.inference.approxlp2: Approximate credal network updating by linear programming.
ch.idsia.crema.inference.bp - package ch.idsia.crema.inference.bp
ch.idsia.crema.inference.bp.cliques - package ch.idsia.crema.inference.bp.cliques
ch.idsia.crema.inference.bp.join - package ch.idsia.crema.inference.bp.join
ch.idsia.crema.inference.bp.junction - package ch.idsia.crema.inference.bp.junction
ch.idsia.crema.inference.bp.moralization - package ch.idsia.crema.inference.bp.moralization
ch.idsia.crema.inference.bp.triangulation - package ch.idsia.crema.inference.bp.triangulation
ch.idsia.crema.inference.fe - package ch.idsia.crema.inference.fe
ch.idsia.crema.inference.sampling - package ch.idsia.crema.inference.sampling
ch.idsia.crema.inference.sepolyve - package ch.idsia.crema.inference.sepolyve: Polytree variable elimination for Separately specified vertex based factors.
ch.idsia.crema.inference.ve - package ch.idsia.crema.inference.ve
ch.idsia.crema.inference.ve.order - package ch.idsia.crema.inference.ve.order
ch.idsia.crema.learning - package ch.idsia.crema.learning
ch.idsia.crema.model - package ch.idsia.crema.model
ch.idsia.crema.model.change - package ch.idsia.crema.model.change
ch.idsia.crema.model.graphical - package ch.idsia.crema.model.graphical
ch.idsia.crema.model.io - package ch.idsia.crema.model.io
ch.idsia.crema.model.io.bif - package ch.idsia.crema.model.io.bif
ch.idsia.crema.model.io.cif - package ch.idsia.crema.model.io.cif
ch.idsia.crema.model.io.dot - package ch.idsia.crema.model.io.dot
ch.idsia.crema.model.io.uai - package ch.idsia.crema.model.io.uai
ch.idsia.crema.model.precondition - package ch.idsia.crema.model.precondition
ch.idsia.crema.preprocess - package ch.idsia.crema.preprocess
ch.idsia.crema.preprocess.creators - package ch.idsia.crema.preprocess.creators
ch.idsia.crema.preprocess.mergers - package ch.idsia.crema.preprocess.mergers
ch.idsia.crema.search - package ch.idsia.crema.search
ch.idsia.crema.search.impl - package ch.idsia.crema.search.impl
ch.idsia.crema.solver - package ch.idsia.crema.solver
ch.idsia.crema.solver.commons - package ch.idsia.crema.solver.commons
ch.idsia.crema.solver.ipopt - package ch.idsia.crema.solver.ipopt
ch.idsia.crema.solver.lpsolve - package ch.idsia.crema.solver.lpsolve
ch.idsia.crema.utility - package ch.idsia.crema.utility
ch.idsia.crema.utility.hull - package ch.idsia.crema.utility.hull
changeEndian(double[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Given a vector representing a multidimensional array, swaps the axis.
changeEQtoLEQ(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
changeGEQtoLEQ(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
checkSignature(Class<? extends GenericFactor>...) - Method in class ch.idsia.crema.model.graphical.MixedModel
children(DirectedAcyclicGraph<Clique, DefaultEdge>, Clique) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation
CIFParser - Class in ch.idsia.crema.model.io.cif
CIFParser() - Constructor for class ch.idsia.crema.model.io.cif.CIFParser
CIFSerializer - Class in ch.idsia.crema.model.io.cif
CIFSerializer() - Constructor for class ch.idsia.crema.model.io.cif.CIFSerializer
Clique - Class in ch.idsia.crema.inference.bp.cliques: Author: Claudio "Dna" Bonesana Project: CreMA Date: 13.02.2018 14:34
Clique() - Constructor for class ch.idsia.crema.inference.bp.cliques.Clique
Clique(int[]) - Constructor for class ch.idsia.crema.inference.bp.cliques.Clique: Creates a new Clique from a sorted array of variables.
Clique(int, int[]) - Constructor for class ch.idsia.crema.inference.bp.cliques.Clique: Creates a new Clique from a sorted array of variables and the array that created the clique.
CliqueSet - Class in ch.idsia.crema.inference.bp.cliques: Author: Claudio "Dna" Bonesana Project: crema Date: 13.11.2020 17:22
CliqueSet() - Constructor for class ch.idsia.crema.inference.bp.cliques.CliqueSet
clone() - Method in class ch.idsia.crema.utility.IndexIterator: Make a copy of the iterator for separate use.
close() - Method in interface ch.idsia.crema.search.IStats
closing(int, int) - Method in class ch.idsia.crema.inference.sepolyve.SePolyController
closing(int, int) - Method in class ch.idsia.crema.search.SearchOperation
cluster(int) - Method in class ch.idsia.crema.inference.fe.EliminationTree: A cluster defines a set of variables for each node in the tree.
CNGenerator - Class in ch.idsia.crema.factor.credal.vertex.generator
CNGenerator() - Constructor for class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator
collect() - Method in class ch.idsia.crema.inference.fe.EliminationTree
collect(double[], int) - Method in interface ch.idsia.crema.factor.algebra.collectors.Collector
collect(double[], int) - Method in class ch.idsia.crema.factor.algebra.collectors.Filter
collect(double[], int) - Method in class ch.idsia.crema.factor.algebra.collectors.LogMarginal
collect(double[], int) - Method in class ch.idsia.crema.factor.algebra.collectors.Marginal
collect(int, Collector, ExtensiveVertexFactorBuilder<T>) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexAbstractFactor
collect(int, BayesianFactorBuilder<F>, BayesianCollector) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
collect(BayesianFactor, int) - Method in interface ch.idsia.crema.factor.algebra.bayesian.BayesianCollector
collect(BayesianFactor, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.LogBayesianMarginal
collect(BayesianFactor, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.SimpleBayesianFilter
collect(BayesianFactor, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.SimpleBayesianMarginal
collect(BayesianFactor, int, Collector) - Method in class ch.idsia.crema.factor.algebra.BayesianAlgebra
collect(ExtensiveVertexFactor, int, Collector) - Method in class ch.idsia.crema.factor.algebra.ExtensiveVertexDefaultAlgebra
collect(ExtensiveVertexFactor, int, Collector) - Method in class ch.idsia.crema.factor.algebra.OnlineConvexHullAlgebra
collect(Clique) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation
collectingEvidence(int) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: Executes the collecting step of the Belief Propagation algorithm.
collectingOrder - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
collectingTree - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
Collector - Interface in ch.idsia.crema.factor.algebra.collectors
CombinationsIterator<E> - Class in ch.idsia.crema.utility: Iterator over the possible combinations of the elements of the arrays given at construction time.
CombinationsIterator(Collection<E>...) - Constructor for class ch.idsia.crema.utility.CombinationsIterator
CombinationsIterator(Collection<Collection<E>>) - Constructor for class ch.idsia.crema.utility.CombinationsIterator
combine(double[], double[], int, long[], long[], int[]) - Method in class ch.idsia.crema.factor.algebra.vertex.LogVertexOperation
combine(double[], double[], int, long[], long[], int[]) - Method in class ch.idsia.crema.factor.algebra.vertex.SimpleVertexOperation
combine(double[], double[], int, long[], long[], int[]) - Method in interface ch.idsia.crema.factor.algebra.vertex.VertexOperation
combine(Operation<F>, F...) - Static method in class ch.idsia.crema.factor.FactorUtil: Combine an array of factors using an operation set.
combine(Operation<F>, F, F) - Static method in class ch.idsia.crema.factor.FactorUtil
combine(Operation<F>, F, F...) - Static method in class ch.idsia.crema.factor.FactorUtil: Combine a factor with an array of factors using an operation set.
combine(Operation<F>, Collection<F>) - Static method in class ch.idsia.crema.factor.FactorUtil: Combine a collection of factors using a custom operator
combine(BayesianFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor: This generic implementation checks if GenericFactor.isLog() the current factor and also the given one.
combine(BayesianFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: The specialized method that avoids the cast of the input variable.
combine(BayesianFactor) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
combine(BayesianFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor: If the input factor is also a BayesianLogFactor, a fast algebra i used.
combine(BayesianFactor, BayesianFactor) - Method in class ch.idsia.crema.factor.algebra.BayesianAlgebra: The specialized method that avoids the cast of the input variable.
combine(ExtensiveVertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
combine(ExtensiveVertexFactor) - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
combine(ExtensiveVertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexLogFactor
combine(ExtensiveVertexFactor, ExtensiveVertexFactor) - Method in class ch.idsia.crema.factor.algebra.ExtensiveVertexDefaultAlgebra
combine(ExtensiveVertexFactor, ExtensiveVertexFactor) - Method in class ch.idsia.crema.factor.algebra.OnlineConvexHullAlgebra
combine(ExtensiveVertexFactor, ExtensiveVertexFactorBuilder<T>, VertexOperation) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexAbstractFactor
combine(VertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
combine(VertexFactor) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
combine(VertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
combine(VertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexLogFactor
combine(VertexFactor, VertexFactor) - Method in class ch.idsia.crema.factor.algebra.SeparateDefaultAlgebra
combine(VertexFactor, VertexFactorBuilder<F>, ToDoubleBiFunction<Double, Double>) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
combine(SymbolicFactor) - Method in class ch.idsia.crema.factor.symbolic.SymbolicAbstractFactor
combine(SymbolicFactor) - Method in interface ch.idsia.crema.factor.symbolic.SymbolicFactor
combine(VoidFactor) - Method in class ch.idsia.crema.factor.VoidFactor: Specialized method that avoids the cast of the input variable.
combine(F) - Method in interface ch.idsia.crema.factor.OperableFactor: Combine this factor with the provided one and return the result as a new factor.
combine(F...) - Static method in class ch.idsia.crema.factor.FactorUtil: Combine an array of factors (One is mandatory)
combine(F...) - Method in interface ch.idsia.crema.factor.OperableFactor: Combine this factor with the provided one and return the result as a new factor.
combine(F, int, F, int) - Method in interface ch.idsia.crema.factor.algebra.bayesian.BayesianOperation
combine(F, int, F, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.LogBayesianOperation
combine(F, int, F, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.SimpleBayesianOperation
combine(F, BayesianFactorBuilder<F>, GenericOperationFunction<F>) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor: This implementation uses long values for strides, sizes and indices, allowing for combined operations.
combine(F, F) - Method in class ch.idsia.crema.factor.algebra.FactorAlgebra
combine(F, F) - Method in interface ch.idsia.crema.factor.algebra.Operation: Combine two or more factors.
combine(F, F...) - Static method in class ch.idsia.crema.factor.FactorUtil: Combine a factor with an array of other factors
combine(F, Collection<F>) - Static method in class ch.idsia.crema.factor.FactorUtil: Combine a factor with a collection of other factors
combine(Collection<F>) - Static method in class ch.idsia.crema.factor.FactorUtil: Combine a collection of factors
combine(Collection<F>) - Method in interface ch.idsia.crema.factor.OperableFactor: Combine this factor with the provided one and return the result as a new factor.
combineAll(BayesianDefaultFactor...) - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorUtilities: Combine this factor with the provided one and return the result as a new factor.
combineAll(Collection<BayesianDefaultFactor>) - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorUtilities
CombinedFactor - Class in ch.idsia.crema.factor.symbolic
CombinedFactor(SymbolicFactor, SymbolicFactor) - Constructor for class ch.idsia.crema.factor.symbolic.CombinedFactor
combineIterator(BayesianDefaultFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: Combine the provided factor with this one.
combineIterator(BayesianDefaultFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
compare(int, int) - Method in interface ch.idsia.crema.utility.IntComparator
compareTo(Instance) - Method in class ch.idsia.crema.preprocess.creators.Instance
compute(double[][]) - Static method in class ch.idsia.crema.utility.hull.LPConvexHull
compute(double[][], boolean) - Static method in class ch.idsia.crema.utility.hull.QuickHull
compute(double[], double[]) - Method in class ch.idsia.crema.entropy.MaximumEntropy
compute(int) - Method in class ch.idsia.crema.inference.fe.EliminationTree
computeHashCode(double[]) - Method in class ch.idsia.crema.factor.algebra.vertex.VertexHashStrategy
concat(Strides) - Method in class ch.idsia.crema.core.Strides: Concatenate 2 strides
condition(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
ConditionalFactor<F extends ConditionalFactor<F>> - Class in ch.idsia.crema.factor.credal: An abstract implementation of the SeparatelySpecified interface.
ConditionalFactor(Strides, Strides) - Constructor for class ch.idsia.crema.factor.credal.ConditionalFactor
ConditionalVariableElimination - Class in ch.idsia.crema.inference.ve: Author: Claudio "Dna" Bonesana Project: crema Date: 19.08.2021 13:50
ConditionalVariableElimination(int...) - Constructor for class ch.idsia.crema.inference.ve.ConditionalVariableElimination
ConditionalVariableElimination(int[], int...) - Constructor for class ch.idsia.crema.inference.ve.ConditionalVariableElimination
conditionDomain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
conditioningDomain - Variable in class ch.idsia.crema.factor.credal.ConditionalFactor
constraint(double[], Relationship, double, int...) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
constraint(LinearConstraint, int...) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
constraintFactor(SeparateHalfspaceFactor) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
constraints(boolean, boolean, Strides, double[][], double[], Relationship...) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
constraints(double[][][], double[][], Relationship) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
constraints(double[][], double[], Relationship...) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
ConstraintsUtil - Class in ch.idsia.crema.utility
ConstraintsUtil() - Constructor for class ch.idsia.crema.utility.ConstraintsUtil
contains(int) - Method in interface ch.idsia.crema.core.Domain: Check if the specified variable is present in the domain
contains(int) - Method in class ch.idsia.crema.core.SimpleDomain
contains(int) - Method in class ch.idsia.crema.core.Strides
contains(int) - Method in class ch.idsia.crema.inference.bp.cliques.Clique: Checks if this Clique contains, between its variables, the given variable.
contains(int, int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Check if the needle value is contained inside the haystack array.
contains(Clique) - Method in class ch.idsia.crema.inference.bp.cliques.Clique: Checks if this clique contains all the elements of the other clique
containsAll(int[]) - Method in class ch.idsia.crema.inference.bp.cliques.Clique: Checks if this Clique contains all the given variables.
content(Strides) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
content(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
convert(BiFunction<F, Integer, R>) - Method in class ch.idsia.crema.model.graphical.DAGModel: Make a copy of the network while transforming the factors.
convert(S, Class<T>, int) - Method in class ch.idsia.crema.factor.convert.ConverterFactory
Converter<S,T> - Interface in ch.idsia.crema.factor
Converter<F extends GenericFactor,G extends GenericFactor,IN extends GraphicalModel<F>,OUT extends GraphicalModel<G>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 16:29
ConverterEvidence<F extends GenericFactor,G extends GenericFactor,IN extends GraphicalModel<F>,OUT extends GraphicalModel<G>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 16:29
ConverterFactory - Class in ch.idsia.crema.factor.convert: TODO should we use dependency injection?
ConverterModel<F extends GenericFactor,G extends GenericFactor,IN extends GraphicalModel<F>,OUT extends GraphicalModel<G>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 16:29
ConverterQuery<F extends GenericFactor,G extends GenericFactor,IN extends GraphicalModel<F>,OUT extends GraphicalModel<G>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 16:29
convex(VertexFactor) - Method in class ch.idsia.crema.factor.algebra.SeparateConvexDefaultAlgebra
CONVEX_HULL_MARG - Static variable in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
convexHull(ConvexHull) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
convexHull(ConvexHull) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
convexHull(ConvexHull) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
ConvexHull - Interface in ch.idsia.crema.utility.hull
copy() - Method in class ch.idsia.crema.factor.bayesian.BayesianAndFactor
copy() - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
copy() - Method in class ch.idsia.crema.factor.bayesian.BayesianDeterministicFactor
copy() - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
copy() - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
copy() - Method in class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor
copy() - Method in class ch.idsia.crema.factor.bayesian.BayesianNotFactor
copy() - Method in class ch.idsia.crema.factor.bayesian.BayesianOrFactor
copy() - Method in class ch.idsia.crema.factor.credal.ConditionalFactor
copy() - Method in class ch.idsia.crema.factor.credal.linear.extensive.ExtensiveHalfspaceFactor
copy() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
copy() - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
copy() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
copy() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
copy() - Method in class ch.idsia.crema.factor.credal.SeparatelySpecifiedCredalFactor
copy() - Method in interface ch.idsia.crema.factor.credal.set.CredalSet
copy() - Method in class ch.idsia.crema.factor.credal.set.HCredalSet
copy() - Method in class ch.idsia.crema.factor.credal.set.IntervalSet
copy() - Method in class ch.idsia.crema.factor.credal.set.Precise
copy() - Method in class ch.idsia.crema.factor.credal.set.VertexSet
copy() - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
copy() - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
copy() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
copy() - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
copy() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
copy() - Method in interface ch.idsia.crema.factor.GenericFactor
copy() - Method in class ch.idsia.crema.factor.symbolic.CombinedFactor
copy() - Method in class ch.idsia.crema.factor.symbolic.DividedFactor
copy() - Method in class ch.idsia.crema.factor.symbolic.FilteredFactor
copy() - Method in class ch.idsia.crema.factor.symbolic.MarginalizedFactor
copy() - Method in class ch.idsia.crema.factor.symbolic.NormalizedFactor
copy() - Method in class ch.idsia.crema.factor.symbolic.PriorFactor
copy() - Method in interface ch.idsia.crema.factor.symbolic.SymbolicFactor
copy() - Method in class ch.idsia.crema.factor.VoidFactor: Factors are only mutable in their data.
copy() - Method in class ch.idsia.crema.inference.fe.EliminationTree
copy() - Method in class ch.idsia.crema.model.graphical.BayesianNetwork
copy() - Method in class ch.idsia.crema.model.graphical.DAGModel
copy() - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
copy() - Method in class ch.idsia.crema.model.graphical.MixedModel
copy() - Method in interface ch.idsia.crema.model.Model: Make a copy of the mutable parts of the model.
copy(Graph<Integer, DefaultEdge>, Graph<Integer, DefaultEdge>) - Static method in class ch.idsia.crema.utility.GraphUtil: Copy the vertices and the edges from the source Graph to the destination Graph.
copyOfRange(double[][], int, int, int) - Static method in class ch.idsia.crema.utility.ArraysUtil
correctFactorDomains() - Method in class ch.idsia.crema.model.graphical.DAGModel: Determines if the factor domains match with the structure of the DAG.
CPUTIME_EXCEEDED - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
create(int, int, int, int, int) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Create a new problem.
create(MixedModel, List<Instance>) - Method in interface ch.idsia.crema.preprocess.creators.CreateFactor: Used by the BinarizeEvidence in order to add a new node that collect all the evidence in a binary form.
create(MixedModel, List<Instance>) - Method in class ch.idsia.crema.preprocess.creators.CreateFactorBayesian
CreateFactor - Interface in ch.idsia.crema.preprocess.creators: Author: Claudio "Dna" Bonesana Project: crema Date: 25.03.2021 18:43
CreateFactorBayesian - Class in ch.idsia.crema.preprocess.creators: Author: Claudio "Dna" Bonesana Project: crema Date: 25.03.2021 18:44
CreateFactorBayesian() - Constructor for class ch.idsia.crema.preprocess.creators.CreateFactorBayesian
CreateFactorBayesian(boolean) - Constructor for class ch.idsia.crema.preprocess.creators.CreateFactorBayesian
createSolver(int) - Method in class ch.idsia.crema.inference.approxlp1.Marginal: Internal creation of a solver used for the optimization step of the move evaluation.
createSolver(int) - Method in class ch.idsia.crema.inference.approxlp1.Posterior
createSolver(int) - Method in class ch.idsia.crema.inference.approxlp2.Marginal: Internal creation of a solver used for the optimization step of the move evaluation.
createSolver(int) - Method in class ch.idsia.crema.inference.approxlp2.Posterior
CredalApproxLP<F extends FilterableFactor<F>> - Class in ch.idsia.crema.inference.approxlp1
CredalApproxLP() - Constructor for class ch.idsia.crema.inference.approxlp1.CredalApproxLP
CredalSet - Interface in ch.idsia.crema.factor.credal.set
CredalVariableElimination - Class in ch.idsia.crema.inference.ve
CredalVariableElimination() - Constructor for class ch.idsia.crema.inference.ve.CredalVariableElimination
CredoArrays - Class in ch.idsia.crema
currentScore - Variable in class ch.idsia.crema.search.impl.AbstractSearch
currentSolution - Variable in class ch.idsia.crema.search.impl.AbstractSearch
CutObserved<F extends FilterableFactor<F>> - Class in ch.idsia.crema.preprocess: A Network alteration step that cuts outbound arcs of observed nodes and filter the children's factors.
CutObserved() - Constructor for class ch.idsia.crema.preprocess.CutObserved

D

DAGModel<F extends GenericFactor> - Class in ch.idsia.crema.model.graphical: Author: Claudio "Dna" Bonesana Project: CreMA Date: 12.02.2018 10:48
DAGModel() - Constructor for class ch.idsia.crema.model.graphical.DAGModel: Create the directed model using the specified network implementation.
DAGModel(DAGModel<F>) - Constructor for class ch.idsia.crema.model.graphical.DAGModel
data - Variable in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
data - Variable in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
data - Variable in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
data() - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Set an empty data set with all the combinations of the given domain.
data(double[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
data(int[], double[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
data(List<List<LinearConstraint>>) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
dataDomain - Variable in class ch.idsia.crema.factor.credal.ConditionalFactor
dataDomain - Variable in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
dataDomain - Variable in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceAbstractFactor
dataDomain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
dataDomain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
deepClone(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil
deepClone(double[][][]) - Static method in class ch.idsia.crema.utility.ArraysUtil
DEFAULT - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
defaultLib - Static variable in class ch.idsia.crema.solver.SolverFactory
DepthFirst - Class in ch.idsia.crema.search.impl
DepthFirst(GraphicalModel<?>) - Constructor for class ch.idsia.crema.search.impl.DepthFirst
deterministic(Strides, int) - Static method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorUtils: Static method that builds a deterministic factor (values can only be ones or zeros) without parent variables.
deterministic(Strides, int) - Static method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDeterministicFactor: Static method that builds a deterministic factor (values can only be ones or zeros) without parent variables.
deterministic(Strides, Strides, int...) - Static method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorUtils: Static method that builds a deterministic factor (values can only be ones or zeros).
deterministic(Strides, Strides, int...) - Static method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDeterministicFactor: Static method that builds a deterministic factor (values can only be ones or zeros).
difference(int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Find the sorted difference of two non-sorted integer arrays.
DiscreteEM - Class in ch.idsia.crema.learning
DiscreteEM() - Constructor for class ch.idsia.crema.learning.DiscreteEM
dispose() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Dispose of the natively allocated memory.
distribute() - Method in class ch.idsia.crema.inference.fe.EliminationTree
distribute(Clique) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation
distributingEvidence() - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: Executes the distribution step of the Belief Propagation algorithm.
distributingTree - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
distributionOrder - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
DIVERGING_ITERATES - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
divide(Operation<F>, F, F) - Static method in class ch.idsia.crema.factor.FactorUtil: Divide a factor by another factor.
divide(BayesianFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor: This generic implementation checks if GenericFactor.isLog() the current factor and also the given one.
divide(BayesianFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: If the input factor is also a BayesianDefaultFactor, a fast algebra i used.
divide(BayesianFactor) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
divide(BayesianFactor) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor: If the input factor is also a BayesianLogFactor, a fast algebra i used.
divide(BayesianFactor, BayesianFactor) - Method in class ch.idsia.crema.factor.algebra.BayesianAlgebra: divide this factor by the provided one.
divide(ExtensiveVertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexAbstractFactor
divide(ExtensiveVertexFactor) - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
divide(ExtensiveVertexFactor, ExtensiveVertexFactor) - Method in class ch.idsia.crema.factor.algebra.ExtensiveVertexDefaultAlgebra
divide(ExtensiveVertexFactor, ExtensiveVertexFactor) - Method in class ch.idsia.crema.factor.algebra.OnlineConvexHullAlgebra
divide(VertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
divide(VertexFactor) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
divide(VertexFactor, VertexFactor) - Method in class ch.idsia.crema.factor.algebra.SeparateDefaultAlgebra
divide(SymbolicFactor) - Method in class ch.idsia.crema.factor.symbolic.SymbolicAbstractFactor
divide(SymbolicFactor) - Method in interface ch.idsia.crema.factor.symbolic.SymbolicFactor
divide(VoidFactor) - Method in class ch.idsia.crema.factor.VoidFactor
divide(F) - Method in interface ch.idsia.crema.factor.OperableFactor
divide(F, int, F, int) - Method in interface ch.idsia.crema.factor.algebra.bayesian.BayesianOperation
divide(F, int, F, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.LogBayesianOperation
divide(F, int, F, int) - Method in class ch.idsia.crema.factor.algebra.bayesian.SimpleBayesianOperation
divide(F, BayesianFactorBuilder<F>, GenericOperationFunction<F>) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor: Divides this factor by the provided one.
divide(F, F) - Method in class ch.idsia.crema.factor.algebra.FactorAlgebra
divide(F, F) - Method in interface ch.idsia.crema.factor.algebra.Operation: Divide the specified factors with eachothers.
DividedFactor - Class in ch.idsia.crema.factor.symbolic
DividedFactor(SymbolicFactor, SymbolicFactor) - Constructor for class ch.idsia.crema.factor.symbolic.DividedFactor
DLLNAME - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt: The default DLL name of the native implementation (without any platform dependent prefixes or suffixes)
DLLPATH - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt: The relative path where the native DLL is found
domain - Variable in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
domain - Variable in class ch.idsia.crema.factor.credal.set.AbstractSet
domain - Variable in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexAbstractFactor
domain(int[], int[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
domain(Domain) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
domain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
domain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
domain(Strides) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
domain(Strides) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
domain(Strides, Strides) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
domain(Strides, Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
domain(Strides, Strides) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
Domain - Interface in ch.idsia.crema.core
DomainBuilder - Class in ch.idsia.crema.core
DomainChange<F extends GenericFactor> - Interface in ch.idsia.crema.model.change: This class can be used to set how a factor should change when a parent is added to a variable.
domainChanger - Variable in class ch.idsia.crema.model.graphical.DAGModel
DotSerialize - Class in ch.idsia.crema.model.io.dot
DotSerialize() - Constructor for class ch.idsia.crema.model.io.dot.DotSerialize
doubleValue() - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor.Helper
DoubleValueIterator - Class in ch.idsia.crema.utility
DoubleValueIterator(IndexIterator, double[]) - Constructor for class ch.idsia.crema.utility.DoubleValueIterator
dropColumns(double[][], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil
dropRows(double[][], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil
dropUnnamed(boolean) - Method in class ch.idsia.crema.data.ReaderCSV
DuplicateModel<F extends GenericFactor> - Class in ch.idsia.crema.preprocess
DuplicateModel() - Constructor for class ch.idsia.crema.preprocess.DuplicateModel

E

elements - Variable in class ch.idsia.crema.model.io.uai.UAIParser
EliminationTree - Class in ch.idsia.crema.inference.fe: Author: Claudio "Dna" Bonesana Project: CreMA Date: 06.02.2018 14:29
EliminationTree() - Constructor for class ch.idsia.crema.inference.fe.EliminationTree
empty() - Static method in class ch.idsia.crema.core.Strides: Return an empty Stride with no variables and a single entry in the strides array.
EMPTY - Static variable in class ch.idsia.crema.core.Strides: The empty stride
enumerate(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Given a 1d vector of doubles, transforms it in a list of tuples where the first element is the sequence number.
enumerate(double[], int) - Static method in class ch.idsia.crema.utility.ArraysUtil: Given a 1d vector of doubles, transforms it in a list of tuples where the first element is the sequence number.
EPS - Static variable in class ch.idsia.crema.inference.approxlp1.ApproxLP1
equals(double[], double[]) - Method in class ch.idsia.crema.factor.algebra.vertex.VertexHashStrategy
equals(int[], int[], boolean, boolean) - Static method in class ch.idsia.crema.utility.ArraysUtil
equals(Object) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
equals(Object) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
equals(Object) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
equals(Object) - Method in class ch.idsia.crema.inference.bp.cliques.Clique
equals(Object) - Method in class ch.idsia.crema.utility.VertexPair
ERROR_IN_STEP_COMPUTATION - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
eval(Solution) - Method in class ch.idsia.crema.inference.approxlp1.Marginal
eval(Solution) - Method in class ch.idsia.crema.inference.approxlp1.Posterior
eval(Solution, Move) - Method in class ch.idsia.crema.inference.approxlp1.Marginal
eval(Solution, Move) - Method in class ch.idsia.crema.inference.approxlp1.Posterior: Evaluate the value for a move and get the new vertex
eval(Solution) - Method in class ch.idsia.crema.inference.approxlp2.Marginal
eval(Solution) - Method in class ch.idsia.crema.inference.approxlp2.Posterior
eval(Solution, Move) - Method in class ch.idsia.crema.inference.approxlp2.Marginal
eval(Solution, Move) - Method in class ch.idsia.crema.inference.approxlp2.Posterior: Evaluate the value for a move and get the new vertex
eval(S) - Method in interface ch.idsia.crema.search.ObjectiveFunction: This might and should be mapped to eval(solution, null); Evaluation of a solution should really be cached.
eval(S, M) - Method in interface ch.idsia.crema.search.ObjectiveFunction: Get the objective function value for doing the specified move on the specified solution
eval_f(int, double[], boolean, double[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Callback function for the objective function.
eval_g(int, double[], boolean, int, double[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Callback function for the constraints.
eval_grad_f(int, double[], boolean, double[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Callback function for the objective function gradient.
eval_h(int, double[], boolean, double, int, double[], boolean, int, int[], int[], double[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Callback function for the hessian.
eval_jac_g(int, double[], boolean, int, int, int[], int[], double[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Callback function for the constraints Jacobian.
EVID - ch.idsia.crema.model.io.uai.UAITypes
evidence - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
evidenceNode - Variable in class ch.idsia.crema.inference.approxlp1.ApproxLP1
EvidUAIParser - Class in ch.idsia.crema.model.io.uai: Parser for evidence files in UAI format
EvidUAIParser(String) - Constructor for class ch.idsia.crema.model.io.uai.EvidUAIParser
EvidUAIParser(List<String>) - Constructor for class ch.idsia.crema.model.io.uai.EvidUAIParser
exec() - Method in interface ch.idsia.crema.inference.Algorithm
exec() - Method in class ch.idsia.crema.inference.bp.cliques.FindCliques: Explore the given triangulated graph searching for all the Cliques found using the given elimination sequence.
exec() - Method in class ch.idsia.crema.inference.bp.join.JoinTreeBuilder: Builds a join tree using the maximal spanning tree found in the model.
exec() - Method in class ch.idsia.crema.inference.bp.junction.JunctionTreeBuilder
exec() - Method in class ch.idsia.crema.inference.bp.moralization.Moralize: Convert a DirectedAcyclicGraph into a SimpleGraph using the moralization algorithm over the given model.
exec() - Method in class ch.idsia.crema.inference.bp.triangulation.MinDegreeOrdering: Apply the Min-Degree-Ordering algorithm to a moralized DirectedAcyclicGraph in order to find an elimination sequence and triangulate the input model.
exec() - Method in class ch.idsia.crema.inference.bp.triangulation.Triangulate
exec() - Method in class ch.idsia.crema.inference.Pipe
exec(SymbolicFactor) - Method in class ch.idsia.crema.factor.symbolic.serialize.SymbolicExecution
execute(GraphicalModel<VertexFactor>) - Method in class ch.idsia.crema.preprocess.LimitVertices
execute(GraphicalModel<F>) - Method in class ch.idsia.crema.preprocess.DuplicateModel
execute(GraphicalModel<F>, TIntIntMap) - Method in class ch.idsia.crema.preprocess.BinarizeEvidence: Execute the binarization and return a new Factor
execute(GraphicalModel<F>, TIntIntMap) - Method in class ch.idsia.crema.preprocess.CutObserved: Execute the algorithm and return the modified NEW network.
execute(GraphicalModel<F>, TIntIntMap) - Method in class ch.idsia.crema.preprocess.MergeObserved
execute(GraphicalModel<F>, TIntIntMap, int...) - Method in class ch.idsia.crema.preprocess.RemoveBarren
execute(IN) - Method in interface ch.idsia.crema.preprocess.ConverterModel: Perform a pre-processing operation and return a new model with the modifications.
execute(IN, TIntIntMap) - Method in interface ch.idsia.crema.preprocess.ConverterEvidence: Perform a pre-processing operation and return a new model with the modifications.
execute(IN, TIntIntMap, int) - Method in interface ch.idsia.crema.preprocess.ConverterQuery: Perform a pre-processing operation and return a new model with the modifications.
execute(IN, TIntIntMap, int...) - Method in interface ch.idsia.crema.preprocess.ConverterQuery: Perform a pre-processing operation and return a new model with the modifications.
execute(M) - Method in interface ch.idsia.crema.preprocess.TransformerModel: Perform a pre-processing operation and return a new model with the modifications.
execute(M, TIntIntMap) - Method in interface ch.idsia.crema.preprocess.TransformerEvidence: Perform a pre-processing operation and return a new model with the modifications.
execute(M, TIntIntMap, int) - Method in interface ch.idsia.crema.preprocess.TransformerQuery: Perform a pre-processing operation and return a new model with the modifications.
execute(M, TIntIntMap, int...) - Method in interface ch.idsia.crema.preprocess.TransformerQuery: Perform a pre-processing operation and return a new model with the modifications.
executeInPlace(GraphicalModel<VertexFactor>) - Method in class ch.idsia.crema.preprocess.LimitVertices
executeInPlace(GraphicalModel<F>, TIntIntMap) - Method in class ch.idsia.crema.preprocess.CutObserved: Execute the operation on the provided network.
executeInPlace(GraphicalModel<F>, TIntIntMap, int...) - Method in class ch.idsia.crema.preprocess.RemoveBarren: Remove barren variable from the specified model.
executeInPlace(M) - Method in interface ch.idsia.crema.preprocess.PreprocessorModel: Perform a pre-processing operation in-place: the given model will be modified.
executeInPlace(M, TIntIntMap) - Method in interface ch.idsia.crema.preprocess.PreprocessorEvidence: Perform a pre-processing operation in-place: the given model will be modified.
executeInPlace(M, TIntIntMap, int) - Method in interface ch.idsia.crema.preprocess.PreprocessorQuery: Perform a pre-processing operation in-place: the given model will be modified.
executeInPlace(M, TIntIntMap, int...) - Method in interface ch.idsia.crema.preprocess.PreprocessorQuery: Perform a pre-processing operation in-place: the given model will be modified.
exp() - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor: Converts this factor in a BayesianDefaultFactor, same data but not in log-space.
exp() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
exp(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Convert an array from log-space to normal space using FastMath.exp(double).
exp(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Convert an array of array from log-space to normal space using FastMath.exp(double).
expandCoeff(Collection<LinearConstraint>, int, int) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
expandCoeff(LinearConstraint, int, int) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
ExpectationMaximization<F extends OperableFactor<F>> - Class in ch.idsia.crema.learning: Author: Rafael Cabañas and Claudio "Dna" Bonesana Project: CreMA
ExpectationMaximization() - Constructor for class ch.idsia.crema.learning.ExpectationMaximization
ExtensiveHalfspaceFactor - Class in ch.idsia.crema.factor.credal.linear.extensive: An extensive credal factor where the bounds are expressed as a set of Linear constraints over the whole domain of the factor.
ExtensiveHalfspaceFactor(Strides) - Constructor for class ch.idsia.crema.factor.credal.linear.extensive.ExtensiveHalfspaceFactor
ExtensiveHalfspaceFactor(Strides, List<LinearConstraint>) - Constructor for class ch.idsia.crema.factor.credal.linear.extensive.ExtensiveHalfspaceFactor
ExtensiveLinearFactor<F extends ExtensiveLinearFactor<F>> - Interface in ch.idsia.crema.factor.credal.linear.extensive: An extensively specified factor based representable as a set of linear constraints over the complete domain.
ExtensiveLinearToRandomBayesian - Class in ch.idsia.crema.factor.convert
ExtensiveLinearToRandomBayesian() - Constructor for class ch.idsia.crema.factor.convert.ExtensiveLinearToRandomBayesian
ExtensiveVectorToExtensiveHalfspace - Class in ch.idsia.crema.factor.convert
ExtensiveVectorToExtensiveHalfspace() - Constructor for class ch.idsia.crema.factor.convert.ExtensiveVectorToExtensiveHalfspace
ExtensiveVertexAbstractFactor - Class in ch.idsia.crema.factor.credal.vertex.extensive
ExtensiveVertexDefaultAlgebra - Class in ch.idsia.crema.factor.algebra
ExtensiveVertexDefaultAlgebra() - Constructor for class ch.idsia.crema.factor.algebra.ExtensiveVertexDefaultAlgebra
ExtensiveVertexDefaultFactor - Class in ch.idsia.crema.factor.credal.vertex.extensive: Author: Claudio "Dna" Bonesana Project: crema Date: 20.04.2021 10:37
ExtensiveVertexDefaultFactor(Strides, int) - Constructor for class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor: Creates a new ExtensiveVertexDefaultFactor with a specified capacity but no assigned vertices.
ExtensiveVertexDefaultFactor(Strides, List<double[]>) - Constructor for class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
ExtensiveVertexFactor - Interface in ch.idsia.crema.factor.credal.vertex.extensive: Author: Claudio "Dna" Bonesana Project: crema Date: 20.04.2021 10:36
ExtensiveVertexFactorBuilder<T extends ExtensiveVertexAbstractFactor> - Interface in ch.idsia.crema.factor.credal.vertex.extensive: Author: Claudio "Dna" Bonesana Project: crema Date: 19.04.2021 14:07
ExtensiveVertexFactorFactory - Class in ch.idsia.crema.factor.credal.vertex.extensive: Author: Claudio "Dna" Bonesana Project: crema Date: 20.04.2021 11:19
ExtensiveVertexLogFactor - Class in ch.idsia.crema.factor.credal.vertex.extensive: Author: Claudio "Dna" Bonesana Project: crema Date: 20.04.2021 10:38
ExtensiveVertexLogFactor(Strides, List<double[]>) - Constructor for class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexLogFactor
ExtensiveVertexLogFactor(ExtensiveVertexDefaultFactor) - Constructor for class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexLogFactor

F

f - Variable in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
f(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianAndFactor
f(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor
f(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianNotFactor
f(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianOrFactor
f(F, int, F, int) - Method in interface ch.idsia.crema.factor.algebra.GenericOperationFunction
FactorAlgebra<F extends OperableFactor<F>> - Class in ch.idsia.crema.factor.algebra: This class just delegates the operations to the factor implementation.
FactorAlgebra() - Constructor for class ch.idsia.crema.factor.algebra.FactorAlgebra
FactorElimination - Class in ch.idsia.crema.inference.fe: Deprecated.
FactorElimination() - Constructor for class ch.idsia.crema.inference.fe.FactorElimination: Deprecated.
FactorElimination2 - Class in ch.idsia.crema.inference.fe: Deprecated.
FactorElimination2() - Constructor for class ch.idsia.crema.inference.fe.FactorElimination2: Deprecated.
FactorEliminationModel - Class in ch.idsia.crema.inference.fe: Author: Claudio "Dna" Bonesana Project: CreMA Date: 06.02.2018 09:37
FactorEliminationModel() - Constructor for class ch.idsia.crema.inference.fe.FactorEliminationModel
FactorEliminationUtils - Class in ch.idsia.crema.inference.fe: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 14:16
FactorEliminationUtils() - Constructor for class ch.idsia.crema.inference.fe.FactorEliminationUtils
FactorQueue<F extends GenericFactor> - Class in ch.idsia.crema.inference.ve
FactorQueue(int[]) - Constructor for class ch.idsia.crema.inference.ve.FactorQueue
factors - Variable in class ch.idsia.crema.model.graphical.DAGModel: The factor associated to a variable
factors - Variable in class ch.idsia.crema.model.io.bif.BIFObject
factors - Variable in class ch.idsia.crema.model.io.uai.BayesUAIParser
FactorUtil - Class in ch.idsia.crema.factor: A utility class with function to help with factors.
FactorUtil() - Constructor for class ch.idsia.crema.factor.FactorUtil
FactorVariableElimination<F extends OperableFactor<F>> - Class in ch.idsia.crema.inference.ve: A specialization of the VariableElimination algorithm for factors that implement the common operations (Combination, Marginalization).
FactorVariableElimination(int[]) - Constructor for class ch.idsia.crema.inference.ve.FactorVariableElimination
factory() - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: This is the entry point for the chained interface of this factory.
factory() - Static method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
factory() - Static method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
factory() - Static method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
factory() - Static method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
FE(int...) - Method in class ch.idsia.crema.inference.fe.FactorElimination: Deprecated.
FE2(int...) - Method in class ch.idsia.crema.inference.fe.FactorElimination2: Deprecated.

Algorithm 10 from "Modeling and Reasoning with BN", Dawiche, p.156
filename - Variable in class ch.idsia.crema.model.io.uai.UAIWriter
filter(int[]) - Method in class ch.idsia.crema.preprocess.RemoveBarren
filter(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor: Reduces the domain by removing a variable and selecting the specified state.
filter(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianAndFactor
filter(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: Reduce the domain by removing a variable and selecting the specified state.
filter(int, int) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
filter(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor: Reduce the domain by removing a variable and selecting the specified state.
filter(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor
filter(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianNotFactor
filter(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianOrFactor
filter(int, int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
filter(int, int) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
filter(int, int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
filter(int, int) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor: Filter the factor by setting a specific variable to a state.
filter(int, int) - Method in class ch.idsia.crema.factor.credal.SeparatelySpecifiedCredalFactor
filter(int, int) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
filter(int, int) - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
filter(int, int) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexLogFactor
filter(int, int) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
filter(int, int) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
filter(int, int) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
filter(int, int) - Method in interface ch.idsia.crema.factor.FilterableFactor: Filter the factor by selecting only the values where the specified variable is in the specified state.
filter(int, int) - Method in interface ch.idsia.crema.factor.OperableFactor: Filter the factor by selecting only the values where the specified variable is in the specified state.
filter(int, int) - Method in class ch.idsia.crema.factor.symbolic.SymbolicAbstractFactor
filter(int, int) - Method in interface ch.idsia.crema.factor.symbolic.SymbolicFactor
filter(int, int) - Method in class ch.idsia.crema.factor.VoidFactor: Reduce the domain by removing a variable and selecting the specified state.
filter(int, int, VertexFactorBuilder<F>) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
filter(Operation<F>, F, int, int) - Static method in class ch.idsia.crema.factor.FactorUtil: Filter a variable in a state from a given factor.
filter(BayesianFactor, int, int) - Method in class ch.idsia.crema.factor.algebra.BayesianAlgebra: Reduce the domain by removing a variable and selecting the specified state.
filter(ExtensiveVertexFactor, int, int) - Method in class ch.idsia.crema.factor.algebra.ExtensiveVertexDefaultAlgebra
filter(ExtensiveVertexFactor, int, int) - Method in class ch.idsia.crema.factor.algebra.OnlineConvexHullAlgebra
filter(VertexFactor, int, int) - Method in class ch.idsia.crema.factor.algebra.SeparateDefaultAlgebra
filter(F, int, int) - Method in class ch.idsia.crema.factor.algebra.FactorAlgebra
filter(F, int, int) - Method in interface ch.idsia.crema.factor.algebra.Operation: Select the subfactor of factor one where the specified variable is in state "state".
filter(F, F) - Static method in class ch.idsia.crema.factor.FactorUtil: An alternative take on filtering some rows out of a factor.
filter(TIntIntMap) - Method in interface ch.idsia.crema.factor.FilterableFactor: Filter the factor by selecting only the values where the specified variable is in the specified state.
filter(TIntIntMap) - Method in class ch.idsia.crema.preprocess.RemoveBarren: Update the evidence removing variable that where eliminated by the barren variables removal.
filter(TIntIntMap[], int...) - Static method in class ch.idsia.crema.core.ObservationBuilder
filter(TIntIntMap[], int[], int[]) - Static method in class ch.idsia.crema.core.ObservationBuilder
Filter - Class in ch.idsia.crema.factor.algebra.collectors
Filter(int, int) - Constructor for class ch.idsia.crema.factor.algebra.collectors.Filter
FilterableFactor<F extends FilterableFactor<F>> - Interface in ch.idsia.crema.factor: Author: Claudio "Dna" Bonesana Project: crema Date: 17.03.2021 09:49
FilteredFactor - Class in ch.idsia.crema.factor.symbolic
FilteredFactor(SymbolicFactor, int, int) - Constructor for class ch.idsia.crema.factor.symbolic.FilteredFactor
filterNonZeroRows(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil
filterRows(double[][], Predicate<double[]>) - Static method in class ch.idsia.crema.utility.ArraysUtil
finalize() - Method in class ch.idsia.crema.solver.ipopt.Ipopt
finalize() - Method in class ch.idsia.crema.solver.lpsolve.Simplex
FindCliques - Class in ch.idsia.crema.inference.bp.cliques: Author: Claudio "Dna" Bonesana Project: CreMA Date: 13.02.2018 11:40
FindCliques() - Constructor for class ch.idsia.crema.inference.bp.cliques.FindCliques
findOrder(int, GraphicalModel<GenericFactor>, int[][]) - Static method in class ch.idsia.crema.inference.ve.order.TopologicalOrder
fisherYatesShuffle(double[]) - Method in class ch.idsia.crema.CredoArrays: for i from n − 1 downto 1 do j ← random integer such that 0 ≤ j ≤ i exchange a[j] and a[i]
flattenDoubles(List) - Static method in class ch.idsia.crema.utility.ArraysUtil: Flatten a list containing a n-dimensional array of doubles
flattenInts(List) - Static method in class ch.idsia.crema.utility.ArraysUtil: Flatten a list containing a n-dimensional array of integers
floatValue() - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor.Helper
FORTRAN_STYLE - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt: Use FORTRAN index style for iRow and jCol vectors
FractionalSolver - Class in ch.idsia.crema.solver.commons: Charnes-Cooper transformation
FractionalSolver() - Constructor for class ch.idsia.crema.solver.commons.FractionalSolver
FrequentistEM - Class in ch.idsia.crema.learning
FrequentistEM(GraphicalModel<BayesianFactor>) - Constructor for class ch.idsia.crema.learning.FrequentistEM
FrequentistEM(GraphicalModel<BayesianFactor>, int[]) - Constructor for class ch.idsia.crema.learning.FrequentistEM
FrequentistEM(GraphicalModel<BayesianFactor>, InferenceJoined<GraphicalModel<BayesianFactor>, BayesianFactor>) - Constructor for class ch.idsia.crema.learning.FrequentistEM
fromDomain(Domain) - Static method in class ch.idsia.crema.core.Strides: A helper method that will reuse a domain if it is of some specific type
fromInt2VertFullD(double[][]) - Method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator: Compute the extreme points of a probability interval using the whole dimensionality.
fromInt2VertSmallD(double[][]) - Static method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator: Compute the extreme points of a probability interval using in d-1 dimensions.
fromIntervalsToCoM(double[][]) - Method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator: Compute the center of mass of a credal set.
fromVerticesToCoM(double[][]) - Method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator
fullConvex(VertexFactor) - Method in class ch.idsia.crema.factor.algebra.SeparateConvexDefaultAlgebra
fullPropagation(DAGModel<F>, int) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: Pre-process the model with CutObserved and RemoveBarren, then performs the BeliefPropagation.collectingEvidence(int) and BeliefPropagation.distributingEvidence() steps.
fullPropagation(DAGModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: Performs the BeliefPropagation.collectingEvidence(int) and BeliefPropagation.distributingEvidence() steps.
fullyPropagated - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation

G

generate(int, int, double) - Method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator
GenericFactor - Interface in ch.idsia.crema.factor: A factor.
GenericOperationFunction<F extends GenericFactor> - Interface in ch.idsia.crema.factor.algebra: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 12:34
get() - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
get() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
get() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
get() - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
get() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
get(Strides, List<double[]>) - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorBuilder
get_bounds_info(int, double[], double[], int, double[], double[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Callback function for the variable bounds and constraint sides.
get_list_of_nonlinear_variables(int, int[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: When LBFGS hessian approximation is used, this method should be overloaded.
get_number_of_nonlinear_variables() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: When LBFGS hessian approximation is used, this method should be overloaded.
get_scaling_parameters(double[], int, double[], int, double[], boolean[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: If you using_scaling_parameters = true, please overload this method, To instruct IPOPT to use scaling values for variables, the first element of use_x_g_scaling should be set.
get_starting_point(int, boolean, double[], boolean, double[], double[], int, boolean, double[]) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Callback function for retrieving a starting point.
getAncestors(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
getBayesianVertex(int) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
getBayesianVertex(int) - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
getBayesianVertex(int) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexLogFactor
getCardinalities() - Method in class ch.idsia.crema.model.io.uai.NetUAIParser
getCardinality(int) - Method in interface ch.idsia.crema.core.Domain: Get the cardinality of a variable in the domain
getCardinality(int) - Method in class ch.idsia.crema.core.SimpleDomain
getCardinality(int) - Method in class ch.idsia.crema.core.Strides
getChildren(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
getChildren(int) - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
getCombinations() - Method in class ch.idsia.crema.core.Strides
getCompatible(LinearConstraint, Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
getCompatibleIndexes(TIntIntMap) - Method in class ch.idsia.crema.core.Strides: Get all indices that are addressed by the specified observations map
getConditioningIndex() - Method in class ch.idsia.crema.utility.SeparateIndexIterator
getConstraintMultipliers() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Gives constraint dual multipliers in final point.
getConstraintValues() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Gives constraint function values at final point.
getConvertedFactor(Class<T>, int) - Method in class ch.idsia.crema.model.graphical.MixedModel
getConverter(Class<S>, Class<T>) - Method in class ch.idsia.crema.factor.convert.ConverterFactory
getConvexHullMarg() - Static method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
getData() - Method in class ch.idsia.crema.data.ReaderCSV
getData() - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
getData() - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
getData() - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
getData() - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
getData() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
getData() - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactor
getData() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
getData() - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
getData() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
getDataDomain() - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
getDataDomain() - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
getDataDomain() - Method in class ch.idsia.crema.factor.credal.ConditionalFactor
getDataDomain() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
getDataDomain() - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getDataDomain() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceAbstractFactor
getDataDomain() - Method in interface ch.idsia.crema.factor.credal.SeparatelySpecified: The domain of the rest of the domain.
getDataDomain() - Method in class ch.idsia.crema.factor.credal.SeparatelySpecifiedCredalFactor
getDataDomain() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
getDataDomain() - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
getDataIndex() - Method in class ch.idsia.crema.utility.SeparateIndexIterator
getDataStructure() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
getDefaultInference(int[]) - Method in class ch.idsia.crema.learning.DiscreteEM
getDeleted() - Method in class ch.idsia.crema.preprocess.RemoveBarren
getDenominator() - Method in class ch.idsia.crema.factor.symbolic.DividedFactor
getDescendants(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
getDeterministic(int, int) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDeterministicFactor: Static method that builds a deterministic factor (values can only be ones or zeros) without parent variables.
getDeterministic(Strides, int, int) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorUtils: Static method that builds a deterministic factor (values can only be ones or zeros) without parent variables.
getDisconnected() - Method in class ch.idsia.crema.model.graphical.DAGModel: Retruns an array with the isolated variables (without parents and children)
getDomain() - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
getDomain() - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
getDomain() - Method in class ch.idsia.crema.factor.credal.ConditionalFactor
getDomain() - Method in class ch.idsia.crema.factor.credal.linear.extensive.ExtensiveHalfspaceFactor
getDomain() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
getDomain() - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getDomain() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceAbstractFactor
getDomain() - Method in class ch.idsia.crema.factor.credal.SeparatelySpecifiedCredalFactor
getDomain() - Method in class ch.idsia.crema.factor.credal.set.AbstractSet
getDomain() - Method in interface ch.idsia.crema.factor.credal.set.CredalSet
getDomain() - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexAbstractFactor
getDomain() - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
getDomain() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
getDomain() - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
getDomain() - Method in interface ch.idsia.crema.factor.GenericFactor
getDomain() - Method in class ch.idsia.crema.factor.symbolic.SymbolicAbstractFactor
getDomain() - Method in interface ch.idsia.crema.factor.symbolic.SymbolicFactor
getDomain() - Method in class ch.idsia.crema.factor.VoidFactor
getDomain(int...) - Method in class ch.idsia.crema.model.graphical.DAGModel
getDomain(int...) - Method in interface ch.idsia.crema.model.Model: Get an instance of the domain for the specified variables of the model.
getEliminationSequence() - Method in class ch.idsia.crema.inference.bp.triangulation.Triangulate
getEliminationSequence() - Method in class ch.idsia.crema.inference.bp.triangulation.TriangulatedGraph
getEvidenceNode() - Method in class ch.idsia.crema.preprocess.BinarizeEvidence
getFactor() - Method in class ch.idsia.crema.factor.symbolic.FilteredFactor
getFactor() - Method in class ch.idsia.crema.factor.symbolic.MarginalizedFactor
getFactor() - Method in class ch.idsia.crema.factor.symbolic.NormalizedFactor
getFactor() - Method in class ch.idsia.crema.factor.symbolic.PriorFactor
getFactor(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
getFactor(int) - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
getFactor1() - Method in class ch.idsia.crema.factor.symbolic.CombinedFactor
getFactor2() - Method in class ch.idsia.crema.factor.symbolic.CombinedFactor
getFactors() - Method in class ch.idsia.crema.model.graphical.DAGModel
getFactors() - Method in interface ch.idsia.crema.model.Model
getFactors(int...) - Method in class ch.idsia.crema.model.graphical.DAGModel
getFactorsMap() - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
getFirst() - Method in class ch.idsia.crema.utility.VertexPair
getFiteredIndexIterator(int[], int[]) - Method in class ch.idsia.crema.core.Strides: Create an iterator over an smaller domain with same strides and sizes and some variables set to specific states.
getFiteredIndexIterator(int, int) - Method in class ch.idsia.crema.core.Strides: Create an iterator over an smaller domain with same strides and sizes and 1 (one) variable set to a specific state.
getFree() - Method in class ch.idsia.crema.inference.approxlp1.Move
getFree() - Method in class ch.idsia.crema.inference.approxlp2.Move
getGiven() - Method in class ch.idsia.crema.factor.symbolic.NormalizedFactor
getHasPerfectEliminationSequence() - Method in class ch.idsia.crema.inference.bp.triangulation.Triangulate
getIndex() - Method in class ch.idsia.crema.inference.fe.Node
getInferenceEngine() - Method in class ch.idsia.crema.learning.ExpectationMaximization
getInferenceModel(GraphicalModel<VertexFactor>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.ve.CredalVariableElimination
getInferenceModel(GraphicalModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.approxlp1.CredalApproxLP
getInstance() - Static method in class ch.idsia.crema.model.change.NullChange
getInstance() - Static method in class ch.idsia.crema.solver.SolverFactory
getInstance(int) - Static method in class ch.idsia.crema.solver.SolverFactory
getIntermediateModels() - Method in class ch.idsia.crema.learning.ExpectationMaximization
getInternalVertices() - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
getInternalVertices() - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
getIOTypeStr(String) - Static method in class ch.idsia.crema.model.io.uai.UAIParser
getIterator(int...) - Method in class ch.idsia.crema.core.Strides: Get an iterator of this domain with the specified variables lock in state 0.
getIterator(Strides, int...) - Method in class ch.idsia.crema.core.Strides: Iterate over another domain.
getIterator(Strides, TIntIntMap) - Method in class ch.idsia.crema.core.Strides
getJoinDeterministic(Strides, TIntIntMap) - Static method in class ch.idsia.crema.factor.bayesian.BayesianDeterministicFactor
getKlthreshold() - Method in class ch.idsia.crema.learning.ExpectationMaximization
getLabel() - Method in interface ch.idsia.crema.model.io.TypesIO
getLabel() - Method in enum ch.idsia.crema.model.io.uai.UAITypes
getLeaves() - Method in class ch.idsia.crema.model.graphical.DAGModel
getLeaves() - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
getLinearProblem() - Method in class ch.idsia.crema.factor.credal.linear.extensive.ExtensiveHalfspaceFactor
getLinearProblem() - Method in interface ch.idsia.crema.factor.credal.linear.extensive.ExtensiveLinearFactor: Convert the factor to a single set of LinearProblems.
getLinearProblem() - Method in class ch.idsia.crema.factor.credal.set.HCredalSet: Get the linear problem composed of all the linear constraints
getLinearProblem(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
getLinearProblem(int...) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
getLinearProblem(int...) - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateLinearFactor
getLinearProblemAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
getLinearProblemAt(int) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
getLinearProblemAt(int) - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateLinearFactor
getLogData() - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
getLogLower(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
getLogLower(int...) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getLogLower(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
getLogLowerAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
getLogLowerAt(int) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getLogLowerAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
getLogUpper(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
getLogUpper(int...) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getLogUpper(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
getLogUpperAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
getLogUpperAt(int) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getLogUpperAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
getLogValue(int...) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
getLogValue(int...) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
getLogValue(int...) - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
getLogValueAt(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
getLogValueAt(int) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
getLogValueAt(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
getLogValueAt(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionLogFactor
getLogValueAt(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
getLower(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
getLower(int...) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getLower(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
getLowerAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
getLowerAt(int) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getLowerAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
getLowerBoundMultipliers() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Gives dual multipliers for variable lower bounds in final point.
getLowers() - Method in class ch.idsia.crema.factor.credal.set.IntervalSet
getMarginalFactors(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
getMaxEntropy(double[], double[]) - Method in class ch.idsia.crema.entropy.AbellanEntropy
getMaximalSpanningTree(JoinTree) - Method in class ch.idsia.crema.inference.bp.join.JoinTreeBuilderKruskal: Uses the PrimMinimumSpanningTree algorithm to compute the maximal spanning tree of the given model.
getMaximalSpanningTree(JoinTree) - Method in class ch.idsia.crema.inference.bp.join.JoinTreeBuilderPrim: Uses the PrimMinimumSpanningTree algorithm to compute the maximal spanning tree of the given model.
getMaxIteration() - Method in class ch.idsia.crema.search.impl.RandomWalk
getMaxSize() - Method in class ch.idsia.crema.factor.VoidFactor
getMessage() - Method in class ch.idsia.crema.inference.fe.Node
getMessage() - Method in exception ch.idsia.crema.model.NoSuchVariableException
getModel() - Method in class ch.idsia.crema.inference.bp.cliques.CliqueSet
getName(SymbolicFactor, int) - Method in class ch.idsia.crema.factor.symbolic.serialize.NLSerializer
getNeighbour() - Method in class ch.idsia.crema.inference.fe.Node
getNetwork() - Method in class ch.idsia.crema.model.graphical.DAGModel
getNetworks() - Method in class ch.idsia.crema.inference.approxlp0.ApproxLP0
getNode() - Method in class ch.idsia.crema.inference.sepolyve.NodeInfo
getNode(int) - Method in class ch.idsia.crema.inference.fe.EliminationTree: Return a new Node associated with the given index.
getNodes() - Method in class ch.idsia.crema.inference.fe.EliminationTree
getNodeStats() - Method in class ch.idsia.crema.inference.sepolyve.SePolyController
getNodeStats() - Method in class ch.idsia.crema.inference.sepolyve.SePolyVE
getNumberOfTables() - Method in class ch.idsia.crema.model.io.uai.NetUAIParser
getNumberOfVariables() - Method in class ch.idsia.crema.model.io.uai.NetUAIParser
getNumerator() - Method in class ch.idsia.crema.factor.symbolic.DividedFactor
getObjectiveValue() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Gives objective function value at final point.
getOffset() - Method in class ch.idsia.crema.model.io.uai.UAIParser
getOffset(int...) - Method in class ch.idsia.crema.core.Strides: Get the offset of the specified variable states using the strides of this object.
getOrder() - Method in class ch.idsia.crema.inference.sepolyve.SePolyController
getOrder() - Method in class ch.idsia.crema.inference.sepolyve.SePolyVE
getOutput() - Method in interface ch.idsia.crema.inference.Algorithm
getOutput() - Method in class ch.idsia.crema.inference.bp.cliques.FindCliques
getOutput() - Method in class ch.idsia.crema.inference.bp.join.JoinTreeBuilder
getOutput() - Method in class ch.idsia.crema.inference.bp.junction.JunctionTreeBuilder
getOutput() - Method in class ch.idsia.crema.inference.bp.moralization.Moralize
getOutput() - Method in class ch.idsia.crema.inference.bp.triangulation.Triangulate
getOutput() - Method in class ch.idsia.crema.inference.Pipe
getOutputs() - Method in class ch.idsia.crema.inference.approxlp0.ApproxLP0
getParent() - Method in class ch.idsia.crema.factor.bayesian.BayesianNotFactor
getParents() - Method in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor
getParents() - Method in class ch.idsia.crema.model.io.uai.NetUAIParser
getParents(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
getParents(int) - Method in interface ch.idsia.crema.model.graphical.GraphicalModel: May NOT return NULL for valid variables!
getPartialOffset(int[], int[]) - Method in class ch.idsia.crema.core.Strides: get the offset for the var/state pairs specified in the params
getPerformedIterations() - Method in class ch.idsia.crema.learning.ExpectationMaximization
getPerturbedZeroConstraints(double) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
getPerturbedZeroConstraints(double) - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactor
getPositions() - Method in class ch.idsia.crema.utility.IndexIterator
getPosterior() - Method in class ch.idsia.crema.inference.sepolyve.SePolyController
getPosterior() - Method in class ch.idsia.crema.learning.ExpectationMaximization
getProgress() - Method in class ch.idsia.crema.search.impl.AbstractSearch
getProgress() - Method in class ch.idsia.crema.search.ProgressEvent
getRandom() - Static method in class ch.idsia.crema.utility.RandomUtil
getRandomVertex() - Method in class ch.idsia.crema.factor.credal.linear.extensive.ExtensiveHalfspaceFactor
getRandomVertex(int...) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
getRandomVertex(int...) - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactor
getRegularization() - Method in class ch.idsia.crema.learning.FrequentistEM
getReorderedIterator(int[]) - Method in class ch.idsia.crema.core.Strides: Get an IndexIterator for this stride object with a different order for the variables.
getResult() - Method in class ch.idsia.crema.model.io.bif.BIFParser
getRoot(JunctionTree, int) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation
getRoots() - Method in class ch.idsia.crema.model.graphical.DAGModel
getRoots() - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
getScore() - Method in class ch.idsia.crema.inference.approxlp1.Move
getScore() - Method in class ch.idsia.crema.inference.approxlp1.Solution
getScore() - Method in class ch.idsia.crema.inference.approxlp2.Move
getScore() - Method in class ch.idsia.crema.inference.approxlp2.Solution
getSecond() - Method in class ch.idsia.crema.utility.VertexPair
getSeparatingDomain() - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
getSeparatingDomain() - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
getSeparatingDomain() - Method in class ch.idsia.crema.factor.credal.ConditionalFactor
getSeparatingDomain() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
getSeparatingDomain() - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getSeparatingDomain() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceAbstractFactor
getSeparatingDomain() - Method in interface ch.idsia.crema.factor.credal.SeparatelySpecified: The domain of the separated part.
getSeparatingDomain() - Method in class ch.idsia.crema.factor.credal.SeparatelySpecifiedCredalFactor
getSeparatingDomain() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
getSeparatingDomain() - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
getShape(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Returns the dimensions of 2d matrix
getShape(int[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Returns the dimensions of 2d matrix
getSingleVertexFactor(int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
getSingleVertexFactor(int...) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
getSingleVertexFactor(int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
getSingleVertexFactor(VertexFactorBuilder<F>, int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
getSize() - Method in interface ch.idsia.crema.core.Domain: Get the number of variables in the domain.
getSize() - Method in class ch.idsia.crema.core.SimpleDomain
getSize() - Method in class ch.idsia.crema.core.Strides
getSize(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
getSize(int) - Method in interface ch.idsia.crema.model.Model: Get the cardinality of a variable in the model.
getSizeAt(int) - Method in interface ch.idsia.crema.core.Domain: Get the cardinality of the variable at the specified offset in the domain.
getSizeAt(int) - Method in class ch.idsia.crema.core.SimpleDomain
getSizeAt(int) - Method in class ch.idsia.crema.core.Strides
getSizes() - Method in interface ch.idsia.crema.core.Domain: Get all the cardinalities of the variables in the domain.
getSizes() - Method in class ch.idsia.crema.core.SimpleDomain
getSizes() - Method in class ch.idsia.crema.core.Strides
getSizes(int...) - Method in class ch.idsia.crema.model.graphical.DAGModel
getSizes(int...) - Method in interface ch.idsia.crema.model.Model: Get the cardinality of a number of variables.
getSourceClass() - Method in class ch.idsia.crema.factor.convert.BayesianToExtensiveVertex
getSourceClass() - Method in class ch.idsia.crema.factor.convert.BayesianToHalfSpace
getSourceClass() - Method in class ch.idsia.crema.factor.convert.BayesianToInterval
getSourceClass() - Method in class ch.idsia.crema.factor.convert.BayesianToVertex
getSourceClass() - Method in class ch.idsia.crema.factor.convert.ExtensiveLinearToRandomBayesian
getSourceClass() - Method in class ch.idsia.crema.factor.convert.HalfspaceToRandomBayesianFactor
getSourceClass() - Method in class ch.idsia.crema.factor.convert.HalfspaceToVertex
getSourceClass() - Method in class ch.idsia.crema.factor.convert.IntervalToBayesianMaxEntropy
getSourceClass() - Method in class ch.idsia.crema.factor.convert.SeparateLinearToExtensiveHalfspaceFactor
getSourceClass() - Method in class ch.idsia.crema.factor.convert.SeparateLinearToHalfspaceFactor
getSourceClass() - Method in class ch.idsia.crema.factor.convert.SeparateLinearToRandomBayesian
getSourceClass() - Method in class ch.idsia.crema.factor.convert.SeparateVertexToExtensiveVertex
getSourceClass() - Method in class ch.idsia.crema.factor.convert.VertexToInterval
getSourceClass() - Method in class ch.idsia.crema.factor.convert.VertexToRandomBayesian
getSourceClass() - Method in interface ch.idsia.crema.factor.Converter
getSources() - Method in class ch.idsia.crema.factor.symbolic.CombinedFactor
getSources() - Method in class ch.idsia.crema.factor.symbolic.DividedFactor
getSources() - Method in class ch.idsia.crema.factor.symbolic.FilteredFactor
getSources() - Method in class ch.idsia.crema.factor.symbolic.MarginalizedFactor
getSources() - Method in class ch.idsia.crema.factor.symbolic.NormalizedFactor
getSources() - Method in class ch.idsia.crema.factor.symbolic.PriorFactor
getSources() - Method in class ch.idsia.crema.factor.symbolic.SymbolicAbstractFactor
getSources() - Method in interface ch.idsia.crema.factor.symbolic.SymbolicFactor
getStages() - Method in class ch.idsia.crema.inference.Pipe
getState() - Method in interface ch.idsia.crema.core.Instantiation
getState() - Method in class ch.idsia.crema.factor.symbolic.FilteredFactor
getStatesFor(int) - Method in class ch.idsia.crema.core.Strides: get the list of states for the specified offset within all the combinations of the domain
getStats() - Method in class ch.idsia.crema.search.impl.AbstractSearch
getStats() - Method in interface ch.idsia.crema.search.IStatCapable
getStatus() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Gives Ipopt status of last OptimizeNLP call.
getStrengths() - Method in class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor
getStride(int) - Method in class ch.idsia.crema.core.Strides: Get the stride of the specified variable in the domain.
getStrideAt(int) - Method in class ch.idsia.crema.core.Strides: Get the stride of the variable of the domain at the specified offset.
getStrides() - Method in class ch.idsia.crema.core.Strides
getSupersetIndexIterator(Strides) - Method in class ch.idsia.crema.core.Strides: Deprecated.
please use {@link Strides::getIterator(targetDomain)}
getTargetClass() - Method in class ch.idsia.crema.factor.convert.BayesianToExtensiveVertex
getTargetClass() - Method in class ch.idsia.crema.factor.convert.BayesianToHalfSpace
getTargetClass() - Method in class ch.idsia.crema.factor.convert.BayesianToInterval
getTargetClass() - Method in class ch.idsia.crema.factor.convert.BayesianToVertex
getTargetClass() - Method in class ch.idsia.crema.factor.convert.ExtensiveLinearToRandomBayesian
getTargetClass() - Method in class ch.idsia.crema.factor.convert.HalfspaceToRandomBayesianFactor
getTargetClass() - Method in class ch.idsia.crema.factor.convert.HalfspaceToVertex
getTargetClass() - Method in class ch.idsia.crema.factor.convert.IntervalToBayesianMaxEntropy
getTargetClass() - Method in class ch.idsia.crema.factor.convert.SeparateLinearToExtensiveHalfspaceFactor
getTargetClass() - Method in class ch.idsia.crema.factor.convert.SeparateLinearToHalfspaceFactor
getTargetClass() - Method in class ch.idsia.crema.factor.convert.SeparateLinearToRandomBayesian
getTargetClass() - Method in class ch.idsia.crema.factor.convert.SeparateVertexToExtensiveVertex
getTargetClass() - Method in class ch.idsia.crema.factor.convert.VertexToInterval
getTargetClass() - Method in class ch.idsia.crema.factor.convert.VertexToRandomBayesian
getTargetClass() - Method in interface ch.idsia.crema.factor.Converter
getTime() - Method in class ch.idsia.crema.inference.sepolyve.NodeInfo
getTrainableVars() - Method in class ch.idsia.crema.learning.ExpectationMaximization
getTriangulated() - Method in class ch.idsia.crema.inference.bp.triangulation.Triangulate
getTrueState() - Method in class ch.idsia.crema.factor.bayesian.BayesianNotFactor
getTrueStates() - Method in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor
getUpper(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
getUpper(int...) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getUpper(int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
getUpperAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
getUpperAt(int) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
getUpperAt(int) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
getUpperBoundMultipliers() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Gives dual multipliers for variable upper bounds in final point.
getUppers() - Method in class ch.idsia.crema.factor.credal.set.IntervalSet
getV() - Method in class ch.idsia.crema.inference.bp.cliques.Clique
getValue() - Method in class ch.idsia.crema.solver.commons.FractionalSolver
getValue() - Method in class ch.idsia.crema.solver.commons.Simplex
getValue() - Method in interface ch.idsia.crema.solver.LinearFractionalSolver
getValue() - Method in interface ch.idsia.crema.solver.LinearSolver: Get the objective function's value
getValue() - Method in class ch.idsia.crema.solver.lpsolve.Simplex
getValue(int...) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
getValue(int...) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
getValue(int...) - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
getValueAt(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
getValueAt(int) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
getValueAt(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
getValueAt(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionLogFactor
getValueAt(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
getValues() - Method in class ch.idsia.crema.inference.approxlp1.Move: Returns P(Xj|∏j) as a vector of doubles.
getValues() - Method in class ch.idsia.crema.inference.approxlp2.Move: Returns P(Xj|∏j) as a vector of doubles.
getVariable() - Method in interface ch.idsia.crema.core.Instantiation
getVariable() - Method in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor
getVariable() - Method in class ch.idsia.crema.factor.symbolic.FilteredFactor
getVariable() - Method in class ch.idsia.crema.factor.symbolic.MarginalizedFactor
getVariable() - Method in class ch.idsia.crema.inference.ve.FactorQueue
getVariableAndParents(int) - Method in class ch.idsia.crema.model.graphical.DAGModel: Returns an array with the parents of a variable and the variable itself.
getVariables() - Method in interface ch.idsia.crema.core.Domain: The vector of variables in this domain.
getVariables() - Method in class ch.idsia.crema.core.SimpleDomain
getVariables() - Method in class ch.idsia.crema.core.Strides
getVariables() - Method in class ch.idsia.crema.inference.bp.cliques.Clique
getVariables() - Method in class ch.idsia.crema.model.graphical.DAGModel
getVariables() - Method in interface ch.idsia.crema.model.Model: Returns a sorted array of all the variables stored in the model.
getVariables(TIntIntMap[]) - Static method in class ch.idsia.crema.core.ObservationBuilder
getVariablesCount() - Method in class ch.idsia.crema.model.graphical.DAGModel
getVariablesCount() - Method in interface ch.idsia.crema.model.Model: The number of variable that compose the model.
getVariableValues() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Gives primal variable values at final point.
getVarNames() - Method in class ch.idsia.crema.data.ReaderCSV
getVArray() - Method in class ch.idsia.crema.inference.bp.cliques.Clique
getVertex() - Method in class ch.idsia.crema.factor.credal.set.Precise
getVertex() - Method in class ch.idsia.crema.solver.commons.FractionalSolver
getVertex() - Method in class ch.idsia.crema.solver.commons.Simplex
getVertex() - Method in interface ch.idsia.crema.solver.LinearFractionalSolver
getVertex() - Method in interface ch.idsia.crema.solver.LinearSolver: Get the vertex of the found solution.
getVertex() - Method in class ch.idsia.crema.solver.lpsolve.Simplex
getVertex(int) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
getVertex(int) - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
getVertexSetIterator() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
getVertices(int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
getVertices(int...) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
getVertices(int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
getVerticesAt(int) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
getVerticesAt(int) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
getVerticesAt(int) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
getVerticesIn() - Method in class ch.idsia.crema.inference.sepolyve.NodeInfo
getVerticesOut() - Method in class ch.idsia.crema.inference.sepolyve.NodeInfo
given(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor.Helper
graph - Variable in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
GraphicalModel<F extends GenericFactor> - Interface in ch.idsia.crema.model.graphical
GraphToJunctionTreePipe<F extends OperableFactor<F>> - Class in ch.idsia.crema.inference.bp: Author: Claudio "Dna" Bonesana Project: crema Date: 16.11.2020 18:22
GraphToJunctionTreePipe() - Constructor for class ch.idsia.crema.inference.bp.GraphToJunctionTreePipe
GraphUtil - Class in ch.idsia.crema.utility: Author: Claudio "Dna" Bonesana Project: crema Date: 30.11.2020 18:10
GraphUtil() - Constructor for class ch.idsia.crema.utility.GraphUtil
Greedy<M,S> - Class in ch.idsia.crema.search.impl
Greedy() - Constructor for class ch.idsia.crema.search.impl.Greedy
GreedyWithRandomRestart<M,S> - Class in ch.idsia.crema.search.impl
GreedyWithRandomRestart() - Constructor for class ch.idsia.crema.search.impl.GreedyWithRandomRestart
groupDomain - Variable in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
groupDomain - Variable in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceAbstractFactor
groupDomain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
groupDomain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory

H

H(BayesianFactor) - Static method in class ch.idsia.crema.entropy.BayesianEntropy: Compute H(A).
H(BayesianFactor, BayesianFactor) - Static method in class ch.idsia.crema.entropy.BayesianEntropy: Compute H(B|A).
HalfspaceToRandomBayesianFactor - Class in ch.idsia.crema.factor.convert
HalfspaceToRandomBayesianFactor() - Constructor for class ch.idsia.crema.factor.convert.HalfspaceToRandomBayesianFactor
HalfspaceToVertex - Class in ch.idsia.crema.factor.convert
HalfspaceToVertex() - Constructor for class ch.idsia.crema.factor.convert.HalfspaceToVertex
hashCode() - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
hashCode() - Method in class ch.idsia.crema.inference.bp.cliques.Clique
hashCode() - Method in class ch.idsia.crema.utility.VertexPair
hasNext() - Method in class ch.idsia.crema.inference.ve.FactorQueue
hasNext() - Method in class ch.idsia.crema.utility.CombinationsIterator
hasNext() - Method in class ch.idsia.crema.utility.DoubleValueIterator
hasNext() - Method in class ch.idsia.crema.utility.IndexIterator
hasNext() - Method in class ch.idsia.crema.utility.SeparateIndexIterator
hasPerfectEliminationSequence - Variable in class ch.idsia.crema.inference.bp.triangulation.Triangulate
hasVertex(V) - Method in class ch.idsia.crema.utility.VertexPair
HCREDAL - ch.idsia.crema.model.io.uai.UAITypes
HCredalSet - Class in ch.idsia.crema.factor.credal.set
HCredalSet() - Constructor for class ch.idsia.crema.factor.credal.set.HCredalSet
HCredalSet(Strides) - Constructor for class ch.idsia.crema.factor.credal.set.HCredalSet: Create the set with no constraints and the specified domain.
HCredalSet(Strides, Collection<LinearConstraint>) - Constructor for class ch.idsia.crema.factor.credal.set.HCredalSet: Initialize with all the data.
HCredalUAIParser - Class in ch.idsia.crema.model.io.uai: Parser for H-CREDAL networks in UAI format
HCredalUAIParser(String) - Constructor for class ch.idsia.crema.model.io.uai.HCredalUAIParser
HCredalUAIParser(List<String>) - Constructor for class ch.idsia.crema.model.io.uai.HCredalUAIParser
HCredalUAIWriter - Class in ch.idsia.crema.model.io.uai
HCredalUAIWriter(DAGModel<? extends OperableFactor<?>>, String) - Constructor for class ch.idsia.crema.model.io.uai.HCredalUAIWriter
Helper(int, int) - Constructor for class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor.Helper

I

improvement(long, double) - Method in interface ch.idsia.crema.search.IStats
incrementOffset(int) - Method in class ch.idsia.crema.model.io.uai.UAIParser
IndexIterator - Class in ch.idsia.crema.utility
IndexIterator(int[], int[], int) - Constructor for class ch.idsia.crema.utility.IndexIterator
IndexIterator(int[], int[], int[], int[], int, int) - Constructor for class ch.idsia.crema.utility.IndexIterator
IndexIterator(int[], int[], int, int) - Constructor for class ch.idsia.crema.utility.IndexIterator
IndexIterator(Strides) - Constructor for class ch.idsia.crema.utility.IndexIterator: Iterated over the specified domain.
indexOf(int) - Method in interface ch.idsia.crema.core.Domain: Find the location/offset of a variable in the domain.
indexOf(int) - Method in class ch.idsia.crema.core.SimpleDomain
indexOf(int) - Method in class ch.idsia.crema.core.Strides
indexOf(int, int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Search one element inside an array and returns the index of its position.
INFEASIBLE_PROBLEM - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
Inference<M extends GraphicalModel<?>,F extends GenericFactor> - Interface in ch.idsia.crema.inference: Common interface of inference algorithm.
InferenceCascade<M extends GraphicalModel<?>,F extends GenericFactor> - Interface in ch.idsia.crema.inference: Author: Claudio "Dna" Bonesana Project: crema Date: 10.03.2021 10:07
InferenceCascadeJoined<M extends GraphicalModel<?>,F extends GenericFactor> - Interface in ch.idsia.crema.inference: Author: Claudio "Dna" Bonesana Project: crema Date: 10.03.2021 10:07
inferenceEngine - Variable in class ch.idsia.crema.learning.ExpectationMaximization
InferenceJoined<M extends GraphicalModel<?>,F extends GenericFactor> - Interface in ch.idsia.crema.inference: Common interface of inference algorithm.
infoLoss(double[], double[], double[], boolean...) - Static method in class ch.idsia.crema.utility.ProbabilityUtil
init(Map<String, ?>) - Method in class ch.idsia.crema.inference.sepolyve.SePolyVE: Initialize the algorithm with limits.
initialize(Map<String, ?>) - Method in class ch.idsia.crema.inference.approxlp1.ApproxLP1
initialize(Map<String, ?>) - Method in class ch.idsia.crema.inference.approxlp2.ApproxLP2
initialize(S, Map<String, Object>) - Method in class ch.idsia.crema.search.impl.AbstractSearch
initialize(S, Map<String, Object>) - Method in class ch.idsia.crema.search.impl.GreedyWithRandomRestart
initialize(S, Map<String, Object>) - Method in interface ch.idsia.crema.search.ISearch: Prepare the search with the specified starting solution and search conditions.
initModel(DAGModel<F>) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
initModel(DAGModel<F>, int) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: Uses the GraphToJunctionTreePipe to build a JunctionTree that will be then used to build the BeliefPropagation.collectingTree and BeliefPropagation.distributingTree.
inline - Variable in class ch.idsia.crema.learning.ExpectationMaximization
Inplace - Annotation Type in ch.idsia.crema.model.precondition: Annotation to inform that an operation will perform the changes inline.
inspectFactorDomains() - Method in class ch.idsia.crema.model.graphical.DAGModel: Determines if the factor domains match with the structure of the DAG.
Instance - Class in ch.idsia.crema.preprocess.creators: Author: Claudio "Dna" Bonesana Project: crema Date: 25.03.2021 18:42
Instance(int, int, int) - Constructor for class ch.idsia.crema.preprocess.creators.Instance
INSTANCE - Static variable in class ch.idsia.crema.entropy.MaximumEntropy
INSTANCE - Static variable in class ch.idsia.crema.factor.convert.BayesianToExtensiveVertex
INSTANCE - Static variable in class ch.idsia.crema.factor.convert.BayesianToHalfSpace
INSTANCE - Static variable in class ch.idsia.crema.factor.convert.BayesianToInterval
INSTANCE - Static variable in class ch.idsia.crema.factor.convert.ConverterFactory
Instantiation - Interface in ch.idsia.crema.core
INSUFFICIENT_MEMORY - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
IntComparator - Interface in ch.idsia.crema.utility
intermediateModels - Variable in class ch.idsia.crema.learning.ExpectationMaximization
INTERNAL_ERROR - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
intersection(int...) - Method in class ch.idsia.crema.core.Strides: Create a domain resulting from the intersection of this domain and the variables domain2.
intersection(int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Find the sorted intersection of two non-sorted integer arrays.
intersection(Strides) - Method in class ch.idsia.crema.core.Strides: Create a new Strides object result of the intersection of this domain with the given one.
intersection(Clique) - Method in class ch.idsia.crema.inference.bp.cliques.Clique: Computes the intersection between the variables of this clique and another one.
intersectionSorted(int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Find the sorted intersection of two sorted integer arrays.
IntervalAbstractFactor - Class in ch.idsia.crema.factor.credal.linear.interval: Author: David Huber Project: crema Date: 22.03.2017 18:50
IntervalAbstractFactor(Strides, Strides) - Constructor for class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
IntervalDefaultFactor - Class in ch.idsia.crema.factor.credal.linear.interval: Author: Claudio "Dna" Bonesana Project: crema Date: 19.04.2021 18:50
IntervalDefaultFactor(Strides, Strides) - Constructor for class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
IntervalDefaultFactor(Strides, Strides, double[][], double[][]) - Constructor for class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
IntervalFactor - Interface in ch.idsia.crema.factor.credal.linear.interval: Author: Claudio "Dna" Bonesana Project: crema Date: 17.03.2021 13:20
IntervalFactorFactory - Class in ch.idsia.crema.factor.credal.linear.interval: Author: Claudio "Dna" Bonesana Project: crema Date: 22.04.2021 17:38
IntervalLogFactor - Class in ch.idsia.crema.factor.credal.linear.interval: Author: Claudio "Dna" Bonesana Project: crema Date: 27.04.2021 18:29
IntervalLogFactor(Strides, Strides, double[][], double[][]) - Constructor for class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
IntervalLogFactor(IntervalDefaultFactor) - Constructor for class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
IntervalSet - Class in ch.idsia.crema.factor.credal.set
IntervalSet() - Constructor for class ch.idsia.crema.factor.credal.set.IntervalSet
IntervalSet(Strides) - Constructor for class ch.idsia.crema.factor.credal.set.IntervalSet: Creates an interval based set over the specified domain.
IntervalSet(Strides, double[], double[]) - Constructor for class ch.idsia.crema.factor.credal.set.IntervalSet: Initialize the Set with all the data.
IntervalSet.BoundsHelper - Class in ch.idsia.crema.factor.credal.set: Helper class to allow the access to the bounds of a set through: credalSet.boundsFor(state1).set(0.2, 0.4);
IntervalToBayesianMaxEntropy - Class in ch.idsia.crema.factor.convert
IntervalToBayesianMaxEntropy() - Constructor for class ch.idsia.crema.factor.convert.IntervalToBayesianMaxEntropy
IntervalVacuousFactor - Class in ch.idsia.crema.factor.credal.linear.interval: Author: Claudio "Dna" Bonesana Project: crema Date: 20.04.2021 09:31
IntervalVacuousFactor(Strides, Strides) - Constructor for class ch.idsia.crema.factor.credal.linear.interval.IntervalVacuousFactor
intValue() - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor.Helper
INVALID_NUMBER_DETECTED - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
INVALID_OPTION - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
INVALID_PROBLEM_DEFINITION - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
inverse(LinearConstraint) - Method in class ch.idsia.crema.utility.ConstraintsUtil
InvokerWithTimeout<R> - Class in ch.idsia.crema.utility
InvokerWithTimeout() - Constructor for class ch.idsia.crema.utility.InvokerWithTimeout
IO - Class in ch.idsia.crema: Access point to all the implemented parsers
IO() - Constructor for class ch.idsia.crema.IO
Ipopt - Class in ch.idsia.crema.solver.ipopt: A Java Native Interface for the Ipopt optimization solver.
Ipopt() - Constructor for class ch.idsia.crema.solver.ipopt.Ipopt: Creates a new NLP Solver using "lib" as path and "jipopt" as the DLL name.
Ipopt(String, String) - Constructor for class ch.idsia.crema.solver.ipopt.Ipopt: Creates a NLP Solver for the given DLL file.
isBound(double) - Method in interface ch.idsia.crema.search.ObjectiveFunction: Test whether the provided score is a bound.
isCompatible(int, TIntIntMap) - Method in class ch.idsia.crema.core.Strides: Test wether the specified index (within the exanded domain) is present in the provied observations map
isCompatible(Object) - Static method in class ch.idsia.crema.model.io.uai.BayesUAIWriter
isCompatible(Object) - Static method in class ch.idsia.crema.model.io.uai.HCredalUAIWriter
isCompatible(Object) - Static method in class ch.idsia.crema.model.io.uai.VCredalUAIWriter
isConsistentWith(Strides) - Method in class ch.idsia.crema.core.Strides: Determines if this Strides object is consistent other.
isDeterministic(BayesianFactor, int...) - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorUtilities
ISearch<M,S> - Interface in ch.idsia.crema.search
isFullyPropagated() - Method in class ch.idsia.crema.inference.bp.BeliefPropagation
isImprovement(double) - Method in interface ch.idsia.crema.search.ObjectiveFunction: since we did not specify if a positive change is good or bad here we can get that information
isImprovement(double, double) - Method in interface ch.idsia.crema.search.ObjectiveFunction: since we did not specify if a positive change is good or bad here we can get that information.
isInside(BayesianFactor) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
isInside(BayesianFactor) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
isLog() - Method in class ch.idsia.crema.factor.convert.HalfspaceToRandomBayesianFactor
isLog() - Method in class ch.idsia.crema.factor.convert.SeparateLinearToRandomBayesian
isLog() - Method in class ch.idsia.crema.factor.convert.VertexToRandomBayesian
isLog() - Method in interface ch.idsia.crema.factor.GenericFactor
isNonNegative(LinearConstraint) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
isNormalization(LinearConstraint) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
isObserved - Variable in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: Flag set to true if the variable of this node is observed.
isOneHot(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil
isOptimal() - Method in class ch.idsia.crema.solver.commons.Simplex
isOptimal() - Method in interface ch.idsia.crema.solver.LinearSolver: Return whether the found solution is optimal.
isOptimal() - Method in class ch.idsia.crema.solver.lpsolve.Simplex
isRecordIntermediate() - Method in class ch.idsia.crema.learning.ExpectationMaximization
isStopAtConvergence() - Method in class ch.idsia.crema.learning.ExpectationMaximization
IStatCapable<M> - Interface in ch.idsia.crema.search
IStats<M> - Interface in ch.idsia.crema.search
isVerbose() - Method in class ch.idsia.crema.learning.ExpectationMaximization
isWithHeader() - Method in class ch.idsia.crema.data.WriterCSV
iterate() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor: Iterator over the two domains data and conditioning
iteration - Variable in class ch.idsia.crema.search.impl.AbstractSearch
ITERATION_EXCEEDED - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
iterations - Variable in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
iterations - Variable in class ch.idsia.crema.inference.sampling.StochasticSampling

J

JasperRandomGenerator(int, double) - Method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator
JoinTree - Class in ch.idsia.crema.inference.bp.join: Author: Claudio "Dna" Bonesana Project: crema Date: 13.11.2020 17:26
JoinTree() - Constructor for class ch.idsia.crema.inference.bp.join.JoinTree
JoinTreeBuilder - Class in ch.idsia.crema.inference.bp.join: Author: Claudio "Dna" Bonesana Project: CreMA Date: 14.02.2018 09:29
JoinTreeBuilder() - Constructor for class ch.idsia.crema.inference.bp.join.JoinTreeBuilder
JoinTreeBuilderKruskal - Class in ch.idsia.crema.inference.bp.join: Author: Claudio "Dna" Bonesana Project: CreMA Date: 14.02.2018 09:32
JoinTreeBuilderKruskal() - Constructor for class ch.idsia.crema.inference.bp.join.JoinTreeBuilderKruskal
JoinTreeBuilderPrim - Class in ch.idsia.crema.inference.bp.join: Author: Claudio "Dna" Bonesana Project: CreMA Date: 14.02.2018 09:32
JoinTreeBuilderPrim() - Constructor for class ch.idsia.crema.inference.bp.join.JoinTreeBuilderPrim
JunctionTree - Class in ch.idsia.crema.inference.bp.junction: Author: Claudio "Dna" Bonesana Project: crema Date: 13.11.2020 17:36
JunctionTree() - Constructor for class ch.idsia.crema.inference.bp.junction.JunctionTree
JunctionTreeBuilder - Class in ch.idsia.crema.inference.bp.junction: Author: Claudio "Dna" Bonesana Project: crema Date: 13.11.2020 15:19
JunctionTreeBuilder() - Constructor for class ch.idsia.crema.inference.bp.junction.JunctionTreeBuilder

K

key() - Method in class ch.idsia.crema.utility.SeparateIndexIterator
KL(double[], double[], boolean...) - Static method in class ch.idsia.crema.utility.ProbabilityUtil: Computes the symmetrized KL distance between p and q
KLDivergence(BayesianFactor, BayesianFactor) - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorUtilities: Compute the KLDivergence between two BayesianFactors.
KLsymmetrized(double[], double[], boolean...) - Static method in class ch.idsia.crema.utility.ProbabilityUtil: Computes the symmetrized KL distance between p and q
klthreshold - Variable in class ch.idsia.crema.learning.ExpectationMaximization

L

label - Variable in enum ch.idsia.crema.model.io.uai.UAITypes
latexToDoubleArray(String) - Static method in class ch.idsia.crema.utility.ArraysUtil: Given a latex code representing a 2d vector, this function obtains the equivalent array of doubles.
latexToDoubleVector(String) - Static method in class ch.idsia.crema.utility.ArraysUtil: Given a latex code representing a 1d vector, this function obtains the equivalent array of doubles.
latexToIntArray(String) - Static method in class ch.idsia.crema.utility.ArraysUtil: Given a latex code representing a 2d vector, this function obtains the equivalent array of ints.
latexToIntVector(String) - Static method in class ch.idsia.crema.utility.ArraysUtil: Given a latex code representing a 1d vector, this function obtains the equivalent array of ints.
left(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
LikelihoodWeightingSampling - Class in ch.idsia.crema.inference.sampling: Author: Claudio "Dna" Bonesana Project: CreMA Date: 05.02.2018 13:33
LikelihoodWeightingSampling() - Constructor for class ch.idsia.crema.inference.sampling.LikelihoodWeightingSampling
LikelihoodWeightingSampling(long) - Constructor for class ch.idsia.crema.inference.sampling.LikelihoodWeightingSampling
LikelihoodWeightingSampling(long, Boolean) - Constructor for class ch.idsia.crema.inference.sampling.LikelihoodWeightingSampling
LikelihoodWeightingSampling(Boolean) - Constructor for class ch.idsia.crema.inference.sampling.LikelihoodWeightingSampling
LimitVertices - Class in ch.idsia.crema.preprocess
LimitVertices() - Constructor for class ch.idsia.crema.preprocess.LimitVertices
LimitVertices(int) - Constructor for class ch.idsia.crema.preprocess.LimitVertices
LinearFactor - Interface in ch.idsia.crema.factor.credal.linear: Marker interface for Linear constraints based factors.
LinearFractionalSolver - Interface in ch.idsia.crema.solver
linearProblemAt(int, Collection<LinearConstraint>) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory: Modifies the linear problem at a given offset.
linearProblemAt(int, LinearConstraintSet) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory: Modifies the linear problem at a given offset.
LinearSolver - Interface in ch.idsia.crema.solver: A linear programming solver's minimal required interface for CreMA's needs.
lines - Variable in class ch.idsia.crema.model.io.uai.UAIParser
lines - Variable in class ch.idsia.crema.model.io.uai.UAIWriter
linvac(int, double) - Method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator
loadProblem(ExtensiveLinearFactor, GoalType) - Method in class ch.idsia.crema.solver.commons.FractionalSolver
loadProblem(ExtensiveLinearFactor, GoalType) - Method in class ch.idsia.crema.solver.commons.Simplex
loadProblem(ExtensiveLinearFactor, GoalType) - Method in interface ch.idsia.crema.solver.LinearFractionalSolver
loadProblem(ExtensiveLinearFactor, GoalType) - Method in interface ch.idsia.crema.solver.LinearSolver: Load the constraints from the specified ExtensiveLinearFactor.
loadProblem(ExtensiveLinearFactor, GoalType) - Method in class ch.idsia.crema.solver.lpsolve.Simplex
loadProblem(LinearConstraintSet, GoalType) - Method in class ch.idsia.crema.solver.commons.FractionalSolver
loadProblem(LinearConstraintSet, GoalType) - Method in class ch.idsia.crema.solver.commons.Simplex
loadProblem(LinearConstraintSet, GoalType) - Method in interface ch.idsia.crema.solver.LinearFractionalSolver
loadProblem(LinearConstraintSet, GoalType) - Method in interface ch.idsia.crema.solver.LinearSolver: Load the constraints from the specified LinearConstraintSet.
loadProblem(LinearConstraintSet, GoalType) - Method in class ch.idsia.crema.solver.lpsolve.Simplex
LocalSearch<M,S> - Class in ch.idsia.crema.search.impl
LocalSearch() - Constructor for class ch.idsia.crema.search.impl.LocalSearch
log() - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
log() - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactorFactory
log() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
log(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Convert an array in log-space using FastMath.log(double).
log(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Convert an array of array in log-space using FastMath.log(double).
log1p(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Convert an array in log-space using FastMath.log1p(double).
LogBayesianMarginal - Class in ch.idsia.crema.factor.algebra.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 21:23
LogBayesianMarginal(int, int) - Constructor for class ch.idsia.crema.factor.algebra.bayesian.LogBayesianMarginal
LogBayesianOperation<F extends BayesianFactor> - Class in ch.idsia.crema.factor.algebra.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 18:57
LogBayesianOperation() - Constructor for class ch.idsia.crema.factor.algebra.bayesian.LogBayesianOperation
logData(double[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
LogicSampling - Class in ch.idsia.crema.inference.sampling: Author: Claudio "Dna" Bonesana Project: CreMA Date: 05.02.2018 13:32
LogicSampling() - Constructor for class ch.idsia.crema.inference.sampling.LogicSampling
LogicSampling(long) - Constructor for class ch.idsia.crema.inference.sampling.LogicSampling
LogicSampling(long, Boolean) - Constructor for class ch.idsia.crema.inference.sampling.LogicSampling
LogicSampling(Boolean) - Constructor for class ch.idsia.crema.inference.sampling.LogicSampling
LogMarginal - Class in ch.idsia.crema.factor.algebra.collectors
LogMarginal(int, int) - Constructor for class ch.idsia.crema.factor.algebra.collectors.LogMarginal
logProb(TIntIntMap[]) - Method in class ch.idsia.crema.model.graphical.BayesianNetwork
logProb(TIntIntMap[], int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
logProb(TIntIntMap[], int) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
logProb(TIntIntMap[], int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
LogSpace - Annotation Type in ch.idsia.crema.factor: Author: Claudio "Dna" Bonesana Project: crema Date: 20.04.2021 16:56
logSum(double, double) - Static method in class ch.idsia.crema.factor.algebra.OperationUtils
LogVertexOperation - Class in ch.idsia.crema.factor.algebra.vertex
LogVertexOperation() - Constructor for class ch.idsia.crema.factor.algebra.vertex.LogVertexOperation
longValue() - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor.Helper
LoopyBeliefPropagation<F extends OperableFactor<F>> - Class in ch.idsia.crema.inference.bp: Author: Claudio "Dna" Bonesana Project: crema Date: 01.03.2021 17:35
LoopyBeliefPropagation() - Constructor for class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
LoopyBeliefPropagation(int) - Constructor for class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
LoopyBeliefPropagation(Boolean) - Constructor for class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
LoopyBeliefPropagation(Boolean, int) - Constructor for class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
LoopyBeliefPropagation.Neighbour - Class in ch.idsia.crema.inference.bp
lower - Variable in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
lower(double[], int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
LP_CONVEX_HULL - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
LPConvexHull - Class in ch.idsia.crema.utility.hull
LPConvexHull() - Constructor for class ch.idsia.crema.utility.hull.LPConvexHull

M

main(String[]) - Static method in class ch.idsia.crema.data.ReaderCSV
main(String[]) - Static method in class ch.idsia.crema.data.WriterCSV
makeReachable(double[][]) - Method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator: Convert probability intervals into reachable ones
marginal(Operation<F>, F, int...) - Static method in class ch.idsia.crema.factor.FactorUtil: return the marginal of a factors.
marginal(F, int...) - Static method in class ch.idsia.crema.factor.FactorUtil: return the marginal of a factors.
Marginal - Class in ch.idsia.crema.factor.algebra.collectors
Marginal - Class in ch.idsia.crema.inference.approxlp1: Marginal problem Objective Function.
Marginal - Class in ch.idsia.crema.inference.approxlp2: Marginal problem Objective Function.
Marginal(int, int) - Constructor for class ch.idsia.crema.factor.algebra.collectors.Marginal
Marginal(GraphicalModel<? extends GenericFactor>, GoalType, int, int) - Constructor for class ch.idsia.crema.inference.approxlp1.Marginal
Marginal(GraphicalModel<? extends GenericFactor>, GoalType, int, int) - Constructor for class ch.idsia.crema.inference.approxlp2.Marginal
marginalize(double[], int, int) - Method in class ch.idsia.crema.factor.algebra.vertex.LogVertexOperation
marginalize(double[], int, int) - Method in class ch.idsia.crema.factor.algebra.vertex.SimpleVertexOperation
marginalize(double[], int, int) - Method in interface ch.idsia.crema.factor.algebra.vertex.VertexOperation
marginalize(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor: Marginalize a variable out of the factor.
marginalize(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: Marginalize a variable out of the factor.
marginalize(int) - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
marginalize(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor: Marginalize a variable out of the factor.
marginalize(int) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
marginalize(int) - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
marginalize(int) - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexLogFactor
marginalize(int) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
marginalize(int) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
marginalize(int) - Method in interface ch.idsia.crema.factor.OperableFactor: Sum out a variable from the factor.
marginalize(int) - Method in class ch.idsia.crema.factor.symbolic.SymbolicAbstractFactor
marginalize(int) - Method in interface ch.idsia.crema.factor.symbolic.SymbolicFactor
marginalize(int) - Method in class ch.idsia.crema.factor.VoidFactor: Marginalize a variable out of the factor.
marginalize(int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
marginalize(int...) - Method in interface ch.idsia.crema.factor.OperableFactor: Sum out a list of variables from the factor.
marginalize(Operation<F>, F, int...) - Static method in class ch.idsia.crema.factor.FactorUtil: marginalize multiple variables out of a factor
marginalize(BayesianFactor, int) - Method in class ch.idsia.crema.factor.algebra.BayesianAlgebra: Marginalize a variable out of the factor.
marginalize(ExtensiveVertexFactor, int) - Method in class ch.idsia.crema.factor.algebra.ExtensiveVertexDefaultAlgebra
marginalize(ExtensiveVertexFactor, int) - Method in class ch.idsia.crema.factor.algebra.OnlineConvexHullAlgebra
marginalize(VertexFactorBuilder<F>, int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor: sum/marginalize some variables out of the credal set.
marginalize(VertexFactor, int) - Method in class ch.idsia.crema.factor.algebra.SeparateConvexDefaultAlgebra
marginalize(VertexFactor, int) - Method in class ch.idsia.crema.factor.algebra.SeparateDefaultAlgebra: sum/marginalize some variables out of the credal set.
marginalize(F, int) - Method in class ch.idsia.crema.factor.algebra.FactorAlgebra
marginalize(F, int) - Method in interface ch.idsia.crema.factor.algebra.Operation: Marginalize the specified variable from the factor.
marginalize(F, int...) - Static method in class ch.idsia.crema.factor.FactorUtil: marginalize multiple variables out of a factor
MarginalizedFactor - Class in ch.idsia.crema.factor.symbolic
MarginalizedFactor(SymbolicAbstractFactor, int) - Constructor for class ch.idsia.crema.factor.symbolic.MarginalizedFactor
max - Variable in class ch.idsia.crema.model.graphical.DAGModel
max - Variable in class ch.idsia.crema.preprocess.LimitVertices
MAX_ITER - Static variable in interface ch.idsia.crema.search.ISearch
MAX_MEM_BYTE - Static variable in class ch.idsia.crema.inference.sepolyve.SePolyVE
MAX_PLATEAU - Static variable in class ch.idsia.crema.search.impl.GreedyWithRandomRestart
MAX_PLATEAU_DEFAULT - Static variable in class ch.idsia.crema.search.impl.GreedyWithRandomRestart
MAX_RESTARTS - Static variable in class ch.idsia.crema.search.impl.GreedyWithRandomRestart
MAX_RESTARTS_DEFAULT - Static variable in class ch.idsia.crema.search.impl.GreedyWithRandomRestart
MAX_TIME - Static variable in interface ch.idsia.crema.search.ISearch
MAX_TIME_MS - Static variable in class ch.idsia.crema.inference.sepolyve.SePolyVE
maxDuration - Variable in class ch.idsia.crema.search.impl.AbstractSearch
MaximumEntropy - Class in ch.idsia.crema.entropy
MaximumEntropy() - Constructor for class ch.idsia.crema.entropy.MaximumEntropy
maxIterations - Variable in class ch.idsia.crema.search.impl.AbstractSearch
MaxMemoryException - Exception in ch.idsia.crema.inference.sepolyve
MaxMemoryException(int, long) - Constructor for exception ch.idsia.crema.inference.sepolyve.MaxMemoryException
MaxTimeException - Exception in ch.idsia.crema.inference.sepolyve
MaxTimeException(int, long) - Constructor for exception ch.idsia.crema.inference.sepolyve.MaxTimeException
merge(IntervalFactor) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor: Merges the bounds with another interval factor.
merge(IntervalFactor) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
merge(IntervalFactor) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
merge(IntervalFactor...) - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor: Merges the bounds with other interval factors
merge(VertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
merge(VertexFactor) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
merge(VertexFactor) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
merge(VertexFactor...) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
merge(VertexFactor...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
merge(GraphicalModel<BayesianFactor>, TIntIntMap, int, int, int, int) - Method in class ch.idsia.crema.preprocess.mergers.MergeFactorsBayesian
merge(GraphicalModel<IntervalFactor>, TIntIntMap, int, int, int, int) - Method in class ch.idsia.crema.preprocess.mergers.MergeFactorsInterval
merge(GraphicalModel<F>, TIntIntMap, int, int, int, int) - Method in interface ch.idsia.crema.preprocess.mergers.MergeFactors
merge(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
mergeBounds(IntervalFactor...) - Static method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
mergeCompatible() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
mergeCompatible() - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactor
mergeCompatible(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
MergeFactors<F extends GenericFactor> - Interface in ch.idsia.crema.preprocess.mergers: Author: Claudio "Dna" Bonesana Project: crema Date: 27.04.2021 13:59
MergeFactorsBayesian - Class in ch.idsia.crema.preprocess.mergers: Author: Claudio "Dna" Bonesana Project: crema Date: 27.04.2021 14:25
MergeFactorsBayesian() - Constructor for class ch.idsia.crema.preprocess.mergers.MergeFactorsBayesian
MergeFactorsInterval - Class in ch.idsia.crema.preprocess.mergers: Author: Claudio "Dna" Bonesana Project: crema Date: 27.04.2021 14:00
MergeFactorsInterval() - Constructor for class ch.idsia.crema.preprocess.mergers.MergeFactorsInterval
MergeObserved<F extends FilterableFactor<F>> - Class in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema-adaptive Date: 14.04.2021 09:31
MergeObserved(MergeFactors<F>) - Constructor for class ch.idsia.crema.preprocess.MergeObserved
mergeVertices(VertexFactor...) - Static method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorUtilities
message(DirectedAcyclicGraph<Clique, DefaultEdge>, Clique) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation
messagePassing(TIntIntMap) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
messages - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
messages - Variable in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
MinDegreeOrdering - Class in ch.idsia.crema.inference.bp.triangulation: Author: Claudio "Dna" Bonesana Project: CreMA Date: 13.02.2018 14:30
MinDegreeOrdering() - Constructor for class ch.idsia.crema.inference.bp.triangulation.MinDegreeOrdering
MinFillOrdering - Class in ch.idsia.crema.inference.ve.order: Clique creation and ordering strategy generator based in the Minimum Fill In Algorithm.
MinFillOrdering() - Constructor for class ch.idsia.crema.inference.ve.order.MinFillOrdering
missingVariables(int[]) - Method in class ch.idsia.crema.inference.fe.EliminationTree: Given a set of variables, check if these variables are covered by this tree.
MixedModel - Class in ch.idsia.crema.model.graphical: Author: Claudio "Dna" Bonesana Project: crema Date: 10.03.2021 11:57
MixedModel() - Constructor for class ch.idsia.crema.model.graphical.MixedModel
MixedModel(DAGModel<GenericFactor>) - Constructor for class ch.idsia.crema.model.graphical.MixedModel
MOD - Class in ch.idsia.crema.factor.symbolic.serialize
MOD() - Constructor for class ch.idsia.crema.factor.symbolic.serialize.MOD
model - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
model - Variable in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
model - Variable in class ch.idsia.crema.model.io.uai.BayesUAIParser
Model<F extends GenericFactor> - Interface in ch.idsia.crema.model
Moralize<F extends GenericFactor> - Class in ch.idsia.crema.inference.bp.moralization: Author: Claudio "Dna" Bonesana Project: CreMA Date: 12.02.2018 11:11
Moralize() - Constructor for class ch.idsia.crema.inference.bp.moralization.Moralize
move(Solution, Move) - Method in class ch.idsia.crema.inference.approxlp1.Neighbourhood
move(Solution, Move) - Method in class ch.idsia.crema.inference.approxlp2.Neighbourhood
move(M) - Method in interface ch.idsia.crema.search.IStats
move(S, M) - Method in interface ch.idsia.crema.search.NeighbourhoodFunction: Perform the specified move for the `from` solution.
Move - Class in ch.idsia.crema.inference.approxlp1
Move - Class in ch.idsia.crema.inference.approxlp2
Move(int) - Constructor for class ch.idsia.crema.inference.approxlp1.Move
Move(int) - Constructor for class ch.idsia.crema.inference.approxlp2.Move

N

name - Variable in class ch.idsia.crema.model.io.bif.BIFObject
ndim(Object) - Static method in class ch.idsia.crema.utility.ArraysUtil
Neighbour(Integer, Integer, int[]) - Constructor for class ch.idsia.crema.inference.bp.LoopyBeliefPropagation.Neighbour
neighbourhood - Variable in class ch.idsia.crema.search.impl.AbstractSearch
Neighbourhood - Class in ch.idsia.crema.inference.approxlp1
Neighbourhood - Class in ch.idsia.crema.inference.approxlp2
Neighbourhood(GraphicalModel<? extends GenericFactor>, int...) - Constructor for class ch.idsia.crema.inference.approxlp1.Neighbourhood
Neighbourhood(GraphicalModel<? extends GenericFactor>, int...) - Constructor for class ch.idsia.crema.inference.approxlp2.Neighbourhood
NeighbourhoodFunction<M,S> - Interface in ch.idsia.crema.search
neighbours - Variable in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
neighbours(Solution) - Method in class ch.idsia.crema.inference.approxlp1.Neighbourhood
neighbours(Solution) - Method in class ch.idsia.crema.inference.approxlp2.Neighbourhood
neighbours(S) - Method in interface ch.idsia.crema.search.NeighbourhoodFunction: Provide the caller with the possible moves available when in the specified Solution.
NetUAIParser<T extends GraphicalModel<? extends GenericFactor>> - Class in ch.idsia.crema.model.io.uai: Generic Parser class for PGMs in UAI format
NetUAIParser(String) - Constructor for class ch.idsia.crema.model.io.uai.NetUAIParser
NetUAIParser(List<String>) - Constructor for class ch.idsia.crema.model.io.uai.NetUAIParser
NetUAIWriter<T extends DAGModel<? extends OperableFactor<?>>> - Class in ch.idsia.crema.model.io.uai
NetUAIWriter(T, String) - Constructor for class ch.idsia.crema.model.io.uai.NetUAIWriter
network - Variable in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
network - Variable in class ch.idsia.crema.inference.bp.triangulation.Triangulate
network - Variable in class ch.idsia.crema.model.graphical.DAGModel: DirectedAcyclicGraph (DAG) implementation of the network associated with this model.
network - Variable in class ch.idsia.crema.model.io.bif.BIFObject
NetworkReduction - Annotation Type in ch.idsia.crema.model.precondition: Should imply Barren
next() - Method in class ch.idsia.crema.inference.ve.FactorQueue
next() - Method in class ch.idsia.crema.utility.CombinationsIterator
next() - Method in class ch.idsia.crema.utility.DoubleValueIterator
next() - Method in class ch.idsia.crema.utility.IndexIterator
NLSerializer - Class in ch.idsia.crema.factor.symbolic.serialize
NLSerializer() - Constructor for class ch.idsia.crema.factor.symbolic.serialize.NLSerializer
Node - Class in ch.idsia.crema.inference.fe: Author: Claudio "Dna" Bonesana Project: CreMA Date: 06.02.2018 14:29
Node(int) - Constructor for class ch.idsia.crema.inference.fe.Node
NodeInfo - Class in ch.idsia.crema.inference.sepolyve
NodeInfo() - Constructor for class ch.idsia.crema.inference.sepolyve.NodeInfo
NodeInfo(int, long, long, long) - Constructor for class ch.idsia.crema.inference.sepolyve.NodeInfo
noisyOr(int[], double[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Requires a pre-defined Domain.
noisyOr(int[], int[], double[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Requires a pre-defined Domain.
NON_IPOPT_EXCEPTION - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
normalize(int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
normalize(int...) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
normalize(int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
normalize(int...) - Method in interface ch.idsia.crema.factor.OperableFactor: Factor normalization.
normalize(int...) - Method in class ch.idsia.crema.factor.symbolic.SymbolicAbstractFactor
normalize(int...) - Method in interface ch.idsia.crema.factor.symbolic.SymbolicFactor
normalize(Operation<F>, F, int...) - Static method in class ch.idsia.crema.factor.FactorUtil
normalize(BayesianFactor, int...) - Method in class ch.idsia.crema.factor.algebra.BayesianAlgebra: Factor normalization.
normalize(VertexFactorBuilder<F>, int...) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
normalize(F, int...) - Static method in class ch.idsia.crema.factor.FactorUtil: Normalize a Factor over a set of its variable (may be empty)
NormalizedFactor - Class in ch.idsia.crema.factor.symbolic: Author: Claudio "Dna" Bonesana Project: crema Date: 28.04.2021 16:36
NormalizedFactor(SymbolicFactor, int...) - Constructor for class ch.idsia.crema.factor.symbolic.NormalizedFactor
normalizeNonZeros(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Function that transforms an array such that all the non-zero elements sum exactly 1.0
NoSuchVariableException - Exception in ch.idsia.crema.model
NoSuchVariableException(int, Domain) - Constructor for exception ch.idsia.crema.model.NoSuchVariableException
not(int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Requires a pre-defined Domain.
not(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Requires a pre-defined Domain.
NOT_ENOUGH_DEGREES_OF_FRE - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
NullChange<F extends GenericFactor> - Class in ch.idsia.crema.model.change: A simple implementation of a domain changer that will null every domain if its domain is altered.
NullChange() - Constructor for class ch.idsia.crema.model.change.NullChange
numberOfTables - Variable in class ch.idsia.crema.model.io.uai.NetUAIParser
numberOfVariables - Variable in class ch.idsia.crema.model.io.uai.NetUAIParser

O

objective - Variable in class ch.idsia.crema.search.impl.AbstractSearch
ObjectiveFunction<M,S> - Interface in ch.idsia.crema.search
ObservationBuilder - Class in ch.idsia.crema.core
observationOf(int) - Method in class ch.idsia.crema.core.Strides
observe(int[], double[][]) - Static method in class ch.idsia.crema.core.ObservationBuilder
observe(int[], int[]) - Static method in class ch.idsia.crema.core.ObservationBuilder
observe(int[], int[][]) - Static method in class ch.idsia.crema.core.ObservationBuilder
observe(int, int) - Static method in class ch.idsia.crema.core.ObservationBuilder
observe(String[], double[][]) - Static method in class ch.idsia.crema.core.ObservationBuilder
observed - Variable in class ch.idsia.crema.preprocess.creators.Instance
observedState - Variable in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: If the flag BayesianLogicFactor.isObserved is set to true, then this field will have the assigned state.
observedStates - Variable in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: States of the variables that are observed
observedVariables - Variable in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: Variables that are observed during filtering.
offset(int) - Method in class ch.idsia.crema.utility.IndexIterator: Create a new Index
one(int) - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
OnlineConvexHullAlgebra - Class in ch.idsia.crema.factor.algebra
OnlineConvexHullAlgebra() - Constructor for class ch.idsia.crema.factor.algebra.OnlineConvexHullAlgebra
open(double) - Method in interface ch.idsia.crema.search.IStats
opening(int, int) - Method in class ch.idsia.crema.inference.sepolyve.SePolyController
opening(int, int) - Method in class ch.idsia.crema.search.SearchOperation
OperableFactor<F extends OperableFactor<F>> - Interface in ch.idsia.crema.factor
Operation<F extends OperableFactor<F>> - Interface in ch.idsia.crema.factor.algebra: A class managing operation on factors.
OperationUtils - Class in ch.idsia.crema.factor.algebra
OperationUtils() - Constructor for class ch.idsia.crema.factor.algebra.OperationUtils
OptimizeNLP() - Method in class ch.idsia.crema.solver.ipopt.Ipopt: This function actually solve the problem.
or(int...) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Requires a pre-defined Domain.
or(int[], int[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory: Requires a pre-defined Domain.
order(int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil
order(int[], IntComparator) - Static method in class ch.idsia.crema.utility.ArraysUtil
OrderingStrategy - Interface in ch.idsia.crema.inference.ve.order: a Function that takes a model and returns an ordering sequence.
outersection(int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil

P

p(int, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
p(String) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: Get the value of a single parameter in the bayesian factor identified by the instantiation provided as a string.
parent - Variable in class ch.idsia.crema.factor.bayesian.BayesianNotFactor: Variables that are parents.
parents - Variable in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: Variables that are parents.
parents - Variable in class ch.idsia.crema.model.io.uai.NetUAIParser
parents(DirectedAcyclicGraph<Clique, DefaultEdge>, Clique) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation
parse() - Method in class ch.idsia.crema.model.io.uai.UAIParser
parse(InputStream) - Method in class ch.idsia.crema.model.io.bif.XMLBIFParser: Load the model from the provided stream.
parseDomainsFirstIsHead() - Method in class ch.idsia.crema.model.io.uai.NetUAIParser
parseDomainsLastIsHead() - Method in class ch.idsia.crema.model.io.uai.NetUAIParser
parseType() - Method in class ch.idsia.crema.model.io.uai.UAIParser
parseVariablesInfo() - Method in class ch.idsia.crema.model.io.uai.NetUAIParser
performedIterations - Variable in class ch.idsia.crema.learning.ExpectationMaximization
perturbZeroConstraints(Collection<LinearConstraint>, double) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
phi() - Method in class ch.idsia.crema.inference.fe.Node
Pipe<F,R> - Class in ch.idsia.crema.inference: Author: Claudio "Dna" Bonesana Project: crema Date: 13.11.2020 14:12
Pipe() - Constructor for class ch.idsia.crema.inference.Pipe
Pipe(List<Algorithm>) - Constructor for class ch.idsia.crema.inference.Pipe
popDouble() - Method in class ch.idsia.crema.model.io.uai.UAIParser
popDoubles() - Method in class ch.idsia.crema.model.io.uai.UAIParser
popElement() - Method in class ch.idsia.crema.model.io.uai.UAIParser
popInteger() - Method in class ch.idsia.crema.model.io.uai.UAIParser
popIntegers() - Method in class ch.idsia.crema.model.io.uai.UAIParser
Posterior - Class in ch.idsia.crema.inference.approxlp1
Posterior - Class in ch.idsia.crema.inference.approxlp2
Posterior(GraphicalModel<? extends GenericFactor>, GoalType, int, int, int) - Constructor for class ch.idsia.crema.inference.approxlp1.Posterior
Posterior(GraphicalModel<? extends GenericFactor>, GoalType, int, int, TIntIntMap) - Constructor for class ch.idsia.crema.inference.approxlp2.Posterior
posteriorModel - Variable in class ch.idsia.crema.learning.ExpectationMaximization
potentialsPerClique - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
preAppend(double[], double...) - Static method in class ch.idsia.crema.utility.ArraysUtil
preAppend(int[], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil
preAppend(String[], String...) - Static method in class ch.idsia.crema.utility.ArraysUtil
Precise - Class in ch.idsia.crema.factor.credal.set
Precise() - Constructor for class ch.idsia.crema.factor.credal.set.Precise
Precise(Strides, double[]) - Constructor for class ch.idsia.crema.factor.credal.set.Precise
preprocess - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
preprocess - Variable in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
preprocess - Variable in class ch.idsia.crema.inference.sampling.StochasticSampling
preprocess(DAGModel<F>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: If BeliefPropagation.preprocess is true, then pre-process the model with CutObserved and RemoveBarren.
preprocess(DAGModel<F>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
preprocess(GraphicalModel<BayesianFactor>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling
Preprocessor<F extends GenericFactor,M extends GraphicalModel<F>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 10:49
PreprocessorEvidence<F extends GenericFactor,M extends GraphicalModel<F>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 10:49
PreprocessorModel<F extends GenericFactor,M extends GraphicalModel<F>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 10:49
PreprocessorQuery<F extends GenericFactor,M extends GraphicalModel<F>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 10:49
print(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
print(LinearConstraint...) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
printLinearProblem(int...) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
PriorFactor - Class in ch.idsia.crema.factor.symbolic
PriorFactor(GenericFactor) - Constructor for class ch.idsia.crema.factor.symbolic.PriorFactor
priorModel - Variable in class ch.idsia.crema.learning.ExpectationMaximization
ProbabilityUtil - Class in ch.idsia.crema.utility
ProbabilityUtil() - Constructor for class ch.idsia.crema.utility.ProbabilityUtil
processConstraints(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.model.io.uai.HCredalUAIWriter
processFile() - Method in class ch.idsia.crema.model.io.uai.BayesUAIParser
processFile() - Method in class ch.idsia.crema.model.io.uai.EvidUAIParser
processFile() - Method in class ch.idsia.crema.model.io.uai.HCredalUAIParser
processFile() - Method in class ch.idsia.crema.model.io.uai.UAIParser
processFile() - Method in class ch.idsia.crema.model.io.uai.VCredalUAIParser
progressed(ProgressEvent) - Method in interface ch.idsia.crema.search.ProgressListener
ProgressEvent - Class in ch.idsia.crema.search
ProgressEvent(Object, double) - Constructor for class ch.idsia.crema.search.ProgressEvent
ProgressListener - Interface in ch.idsia.crema.search
project(BayesianFactor, int...) - Static method in class ch.idsia.crema.inference.fe.FactorEliminationUtils: Given a BayesianFactor Fr, marginalize all the variables of this factor that are not equals to the query variable Q.

Q

query(int) - Method in interface ch.idsia.crema.inference.InferenceCascade: Perform an inference.
query(int...) - Method in interface ch.idsia.crema.inference.InferenceCascadeJoined: Perform an inference.
query(DAGModel<BayesianFactor>, int) - Method in class ch.idsia.crema.inference.fe.FactorEliminationModel: Algorithm 9 from "Modeling and Reasoning with BN", Dawiche, p.153
query(DAGModel<BayesianFactor>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.fe.FactorEliminationModel
query(DAGModel<F>, int) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: Pre-process the model with CutObserved and RemoveBarren, then performs the BeliefPropagation.collectingEvidence(int) step.
query(DAGModel<F>, int) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
query(DAGModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: Pre-process the model with CutObserved and RemoveBarren, then performs the BeliefPropagation.collectingEvidence(int) step.
query(DAGModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
query(DAGModel<F>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
query(GraphicalModel<BayesianFactor>, int) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling
query(GraphicalModel<BayesianFactor>, int...) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling
query(GraphicalModel<BayesianFactor>, int...) - Method in class ch.idsia.crema.inference.ve.ConditionalVariableElimination
query(GraphicalModel<BayesianFactor>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling
query(GraphicalModel<BayesianFactor>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.ve.ConditionalVariableElimination
query(GraphicalModel<BayesianFactor>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling
query(GraphicalModel<BayesianFactor>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.ve.ConditionalVariableElimination
query(GraphicalModel<VertexFactor>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.sepolyve.SePolyVE: Compute the marginal or posterior probability of query given evidence in the model.
query(GraphicalModel<VertexFactor>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.ve.CredalVariableElimination: Query K(target|evidence) in the model provided to the constructor
query(GraphicalModel<F>, int) - Method in class ch.idsia.crema.inference.approxlp1.ApproxLP1: Preconditions: single evidence node Factors must be one of ExtensiveLinearFactors, BayesianFactor or SeparateLinearFactor
query(GraphicalModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.approxlp0.ApproxLP0: This method generates a certain amount of networks, specified by the n parameter, from the given model and then use the chosen inference engine.
query(GraphicalModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.approxlp1.ApproxLP1: Perform a RemoveBarren on the input model given the query and the evidence before calling the method ApproxLP1.query(GraphicalModel, int);
query(GraphicalModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.approxlp1.CredalApproxLP
query(GraphicalModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.approxlp2.ApproxLP2: No need to remove barren variables!
query(GraphicalModel<F>, TIntIntMap, int) - Method in class ch.idsia.crema.inference.ve.VariableElimination
query(GraphicalModel<F>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.ve.VariableElimination
query(M, int) - Method in interface ch.idsia.crema.inference.Inference: Perform an inference.
query(M, int...) - Method in interface ch.idsia.crema.inference.InferenceJoined: Perform an inference.
query(M, TIntIntMap, int) - Method in interface ch.idsia.crema.inference.Inference: Perform an inference.
query(M, TIntIntMap, int...) - Method in interface ch.idsia.crema.inference.InferenceJoined: Perform an inference.
queryFullPropagated(int) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation: Before use this method, it is mandatory to user the BeliefPropagation.fullPropagation(DAGModel, TIntIntMap, int) method.
QUICK_HULL - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
QuickHull - Class in ch.idsia.crema.utility.hull
QuickHull() - Constructor for class ch.idsia.crema.utility.hull.QuickHull

R

random - Variable in class ch.idsia.crema.search.impl.GreedyWithRandomRestart
random() - Method in class ch.idsia.crema.inference.approxlp1.Neighbourhood
random() - Method in class ch.idsia.crema.inference.approxlp2.Neighbourhood
random() - Method in interface ch.idsia.crema.search.NeighbourhoodFunction: Generate a random solution.
random(Strides, int) - Static method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorUtilities: Method for generating a random VertexFactor of a joint credal set.
random(Strides, Strides) - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorUtilities
random(Strides, Strides, int) - Static method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorUtilities: Method for generating a random VertexFactor of a conditional credal set.
random(BayesianNetwork, int...) - Static method in class ch.idsia.crema.model.graphical.BayesianNetwork: Creates a new model with the same structure but with random probability values
randomMassFunction(int) - Static method in class ch.idsia.crema.factor.credal.vertex.generator.CNGenerator
RandomUtil - Class in ch.idsia.crema.utility
RandomUtil() - Constructor for class ch.idsia.crema.utility.RandomUtil
RandomWalk<M,S> - Class in ch.idsia.crema.search.impl
RandomWalk() - Constructor for class ch.idsia.crema.search.impl.RandomWalk
read() - Method in class ch.idsia.crema.data.ReaderCSV
read(String) - Static method in class ch.idsia.crema.IO
read(String) - Static method in class ch.idsia.crema.model.io.bif.BIFParser
read(String) - Static method in class ch.idsia.crema.model.io.uai.UAIParser
readContent() - Method in class ch.idsia.crema.model.io.uai.UAIParser
ReaderCSV - Class in ch.idsia.crema.data
ReaderCSV(String) - Constructor for class ch.idsia.crema.data.ReaderCSV
readLines(String) - Static method in class ch.idsia.crema.model.io.uai.UAIParser
readUAI(String) - Static method in class ch.idsia.crema.IO
recordIntermediate - Variable in class ch.idsia.crema.learning.ExpectationMaximization
REDUCED_HULL - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
REDUCED_HULL_10 - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
REDUCED_HULL_2 - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
REDUCED_HULL_3 - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
REDUCED_HULL_4 - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
REDUCED_HULL_5 - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
REDUCED_HULL_50 - Static variable in interface ch.idsia.crema.utility.hull.ConvexHull
ReducedHull - Class in ch.idsia.crema.utility.hull
ReducedHull() - Constructor for class ch.idsia.crema.utility.hull.ReducedHull
ReducedHull(int) - Constructor for class ch.idsia.crema.utility.hull.ReducedHull
register(Converter<?, ?>) - Method in class ch.idsia.crema.factor.convert.ConverterFactory
remove() - Method in class ch.idsia.crema.inference.ve.FactorQueue
remove() - Method in class ch.idsia.crema.utility.CombinationsIterator
remove() - Method in class ch.idsia.crema.utility.IndexIterator
remove() - Method in class ch.idsia.crema.utility.SeparateIndexIterator
remove(double[], int) - Static method in class ch.idsia.crema.utility.ArraysUtil: Remove the element at the specified index from the base array.
remove(int) - Method in class ch.idsia.crema.inference.fe.EliminationTree: Search and remove the first occurrences of a Node that have a single neighbour and its index is not the given root index.
remove(int...) - Method in class ch.idsia.crema.core.Strides: Remove some variable from this domain.
remove(int[], int) - Static method in class ch.idsia.crema.utility.ArraysUtil: Remove the element at the specified index from the base array.
remove(Strides) - Method in class ch.idsia.crema.core.Strides: Remove some variable from this domain.
remove(F, int) - Method in interface ch.idsia.crema.model.change.DomainChange: Remove a variable from the domain of a factor.
remove(F, int) - Method in class ch.idsia.crema.model.change.NullChange
remove(F, int) - Method in class ch.idsia.crema.model.change.VoidChange
remove(T[], int) - Static method in class ch.idsia.crema.utility.ArraysUtil: Remove the element at the specified index from the base array.
removeAllFromSortedArray(int[], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil: Remove the elements from the array assuming both arrays are sorted and not null
removeAt(int...) - Method in class ch.idsia.crema.core.Strides: Creates a stride with one or more variables excluded.
RemoveBarren<F extends GenericFactor> - Class in ch.idsia.crema.preprocess
RemoveBarren() - Constructor for class ch.idsia.crema.preprocess.RemoveBarren
removed(int) - Method in interface ch.idsia.crema.core.Domain: Notify the domain that a variable has been removed.
removed(int) - Method in class ch.idsia.crema.core.SimpleDomain
removed(int) - Method in class ch.idsia.crema.core.Strides
removeFromSortedArray(int[], int) - Static method in class ch.idsia.crema.utility.ArraysUtil: remove the element from the array assuming the array is sorted.
removeNonNegative(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
removeNonNegativeConstraints() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
removeNonNegativeConstraints() - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactor
removeNormalization(Collection<LinearConstraint>) - Static method in class ch.idsia.crema.utility.ConstraintsUtil
removeNormConstraints() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
removeNormConstraints() - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactor
removeParent(int, int) - Method in class ch.idsia.crema.model.graphical.DAGModel
removeParent(int, int) - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
removeParent(int, int, DomainChange<F>) - Method in class ch.idsia.crema.model.graphical.DAGModel
removeParent(int, int, DomainChange<F>) - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
removeProgressListener(ProgressListener) - Method in class ch.idsia.crema.search.impl.AbstractSearch
removeState(int, int) - Method in class ch.idsia.crema.model.graphical.DAGModel
removeState(int, int) - Method in interface ch.idsia.crema.model.Model: remove a specific state from a variable
removeState(F, int, int) - Method in interface ch.idsia.crema.model.change.CardinalityChange: Update the factor by removing the specified state from the variable.
removeState(F, int, int) - Method in class ch.idsia.crema.model.change.NullChange
removeState(F, int, int) - Method in class ch.idsia.crema.model.change.VoidChange
removeVariable(int) - Method in class ch.idsia.crema.model.graphical.DAGModel
removeVariable(int) - Method in interface ch.idsia.crema.model.Model: Remove a variable from the model.
replace(double[], double, double) - Static method in class ch.idsia.crema.utility.ArraysUtil
replace(double[], Predicate<Double>, double) - Static method in class ch.idsia.crema.utility.ArraysUtil
replace(double, double) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
replace(double, double) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
replace(int[], int, int) - Static method in class ch.idsia.crema.utility.ArraysUtil
replace(int[], Predicate<Integer>, int) - Static method in class ch.idsia.crema.utility.ArraysUtil
replaceNaN(double) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: Replaces all Not-a-Number values with the given value.
replaceNaN(double) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor: Replace all Double.NaN values with the given replacement value.
reseparate(Strides) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
reseparate(Strides) - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
reseparate(Strides) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
reseparate(Strides, VertexFactorBuilder<F>) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
reset() - Static method in class ch.idsia.crema.utility.RandomUtil: Set the RandomUtil.supplier function back to the original one.
reset(long) - Method in interface ch.idsia.crema.search.IStats
reshape2d(double[], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil: Transforms a 1d vector into a 2d matrix
reshape3d(double[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Transforms a 1d vector into a 2d matrix
RESTORATION_FAILED - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
retain(int[]) - Method in class ch.idsia.crema.core.Strides: Get an IndexIterator for this stride object with a different order for the variables.
reverse(int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Non inline version of the Apache commons reverse methods
reverseDomain() - Method in class ch.idsia.crema.core.Strides
reverseDomain(Strides) - Static method in class ch.idsia.crema.core.Strides
right(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
root - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
round(double[], int) - Static method in class ch.idsia.crema.utility.ArraysUtil: Round all the values in a vector with a number of decimals.
round(VertexFactor) - Method in class ch.idsia.crema.factor.algebra.SeparateDefaultAlgebra
roundArrayToTarget(double[], double, double) - Static method in class ch.idsia.crema.utility.ArraysUtil: Normalize an array by fixing the last value of the array so that it sums up to the target value.
roundNonZerosToTarget(double[], double, int) - Static method in class ch.idsia.crema.utility.ArraysUtil: Round non zero values such as the sum is equal to the target.
rowsWhere(double[][], Predicate<double[]>) - Static method in class ch.idsia.crema.utility.ArraysUtil
rowsWhereAllZeros(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil
run() - Method in class ch.idsia.crema.search.impl.AbstractSearch
run() - Method in interface ch.idsia.crema.search.ISearch: keep calling step until return value is true or some other halting criteria is met.
run(int...) - Method in class ch.idsia.crema.inference.ve.VariableElimination: Execute the variable elimination asking for the marginal or posterior of the specified variables.
run(GraphicalModel<?>) - Method in class ch.idsia.crema.model.io.dot.DotSerialize
run(GraphicalModel<BayesianFactor>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.sampling.LikelihoodWeightingSampling: Algorithm 46 from "Modeling and Reasoning with BN", Dawiche, p.380
run(GraphicalModel<BayesianFactor>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.sampling.LogicSampling: Algorithm 45 from "Modeling and Reasoning with BN", Dawiche, p.385
run(GraphicalModel<BayesianFactor>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling
run(Collection<TIntIntMap>, int) - Method in class ch.idsia.crema.learning.ExpectationMaximization
run(Callable<R>, long) - Method in class ch.idsia.crema.utility.InvokerWithTimeout

S

sample() - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor: Uses cumulative probability to get a sample from this BayesianFactor.
sample() - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: Sample the distribution of this factor.
sample() - Method in interface ch.idsia.crema.factor.bayesian.BayesianFactor
sample() - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor
sample() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
sample() - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
sample(BayesianFactor) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling: Sample the distribution of a BayesianFactor with not parent nodes.
sample(BayesianFactor, TIntIntMap) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling: Sample the distribution of a BayesianFactor with a specific set of parent observations.
sample(DAGModel<BayesianFactor>, int...) - Method in class ch.idsia.crema.inference.sampling.BayesianNetworkSampling
sample(DAGModel<BayesianFactor>, TIntIntMap, int...) - Method in class ch.idsia.crema.inference.sampling.BayesianNetworkSampling
sample(GraphicalModel<VertexFactor>) - Method in class ch.idsia.crema.inference.sampling.VertexNetworkSampling
sample(GraphicalModel<VertexFactor>, int) - Method in class ch.idsia.crema.inference.sampling.VertexNetworkSampling
sampleCategorical(double[]) - Static method in class ch.idsia.crema.utility.RandomUtil
sampleNormalized(int) - Static method in class ch.idsia.crema.utility.RandomUtil: Sample of vector where the sum of all its elements is 1
samples(DAGModel<BayesianFactor>, int, int...) - Method in class ch.idsia.crema.inference.sampling.BayesianNetworkSampling
samples(DAGModel<BayesianFactor>, TIntIntMap, int, int...) - Method in class ch.idsia.crema.inference.sampling.BayesianNetworkSampling
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.BayesUAIParser
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.BayesUAIWriter
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.HCredalUAIParser
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.HCredalUAIWriter
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.NetUAIParser
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.NetUAIWriter
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.UAIParser
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.UAIWriter
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.VCredalUAIParser
sanityChecks() - Method in class ch.idsia.crema.model.io.uai.VCredalUAIWriter
scale(double) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
scale(double) - Method in class ch.idsia.crema.factor.bayesian.BayesianLogFactor: Multiplies all value by a given constant.
scan() - Method in class ch.idsia.crema.model.io.bif.BIFParser
SEARCH_DIRECTION_TOO_SMALL - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
SearchOperation - Class in ch.idsia.crema.search
SearchOperation() - Constructor for class ch.idsia.crema.search.SearchOperation
sendMessage(int, int, DAGModel<F>, TIntIntMap, Map<Pair<Integer, Integer>, F>) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
SeparateConvexDefaultAlgebra - Class in ch.idsia.crema.factor.algebra
SeparateConvexDefaultAlgebra() - Constructor for class ch.idsia.crema.factor.algebra.SeparateConvexDefaultAlgebra
SeparateConvexDefaultAlgebra(boolean, double, boolean) - Constructor for class ch.idsia.crema.factor.algebra.SeparateConvexDefaultAlgebra
separatedDomain - Variable in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
separatedDomain(Strides) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
SeparateDefaultAlgebra - Class in ch.idsia.crema.factor.algebra
SeparateDefaultAlgebra() - Constructor for class ch.idsia.crema.factor.algebra.SeparateDefaultAlgebra
SeparateDefaultAlgebra(double) - Constructor for class ch.idsia.crema.factor.algebra.SeparateDefaultAlgebra
SeparateHalfspaceAbstractFactor - Class in ch.idsia.crema.factor.credal.linear.separate: An abstract implementation of the SeparateHalfspaceAbstractFactor interface.
SeparateHalfspaceAbstractFactor() - Constructor for class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceAbstractFactor
SeparateHalfspaceAbstractFactor(Strides, Strides) - Constructor for class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceAbstractFactor
SeparateHalfspaceDefaultFactor - Class in ch.idsia.crema.factor.credal.linear.separate: A separately specified Credal factor that has a list of linear constrains for each separation.
SeparateHalfspaceDefaultFactor(Strides, Strides, TIntObjectMap<List<LinearConstraint>>) - Constructor for class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor
SeparateHalfspaceFactor - Interface in ch.idsia.crema.factor.credal.linear.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 26.04.2021 17:13
SeparateHalfspaceFactorFactory - Class in ch.idsia.crema.factor.credal.linear.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 26.04.2021 17:23
SeparateHalfspaceFactorUtils - Class in ch.idsia.crema.factor.credal.linear.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 26.04.2021 17:47
SeparateHalfspaceFactorUtils() - Constructor for class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorUtils
SeparateIndexIterator - Class in ch.idsia.crema.utility: Iterator over two separate strides/
SeparateIndexIterator(Strides, Strides) - Constructor for class ch.idsia.crema.utility.SeparateIndexIterator: Iterate the two domains
SeparateIndexIterator(IndexIterator, IndexIterator) - Constructor for class ch.idsia.crema.utility.SeparateIndexIterator
SeparateLinearFactor<F extends SeparateLinearFactor<F>> - Interface in ch.idsia.crema.factor.credal.linear.separate
SeparateLinearToExtensiveHalfspaceFactor - Class in ch.idsia.crema.factor.convert
SeparateLinearToExtensiveHalfspaceFactor() - Constructor for class ch.idsia.crema.factor.convert.SeparateLinearToExtensiveHalfspaceFactor
SeparateLinearToHalfspaceFactor - Class in ch.idsia.crema.factor.convert
SeparateLinearToHalfspaceFactor() - Constructor for class ch.idsia.crema.factor.convert.SeparateLinearToHalfspaceFactor
SeparateLinearToRandomBayesian - Class in ch.idsia.crema.factor.convert: Converts a Separately Specified Linear Credal Factor (SeparateLinearFactor) to a BayesianFactor by returning a vertex obtained using a random direction in the linear optimization.
SeparateLinearToRandomBayesian() - Constructor for class ch.idsia.crema.factor.convert.SeparateLinearToRandomBayesian
SeparatelySpecified<F extends SeparatelySpecified<F>> - Interface in ch.idsia.crema.factor.credal: A separately specified Factor has a for each possible combination of its "grouping" domain.
SeparatelySpecifiedCredalFactor<S extends CredalSet> - Class in ch.idsia.crema.factor.credal: A separately specified credal set where there is a set of something for each instantiation of the parents.
SeparatelySpecifiedCredalFactor() - Constructor for class ch.idsia.crema.factor.credal.SeparatelySpecifiedCredalFactor
SeparatelySpecifiedCredalFactor(Strides, Strides) - Constructor for class ch.idsia.crema.factor.credal.SeparatelySpecifiedCredalFactor
SeparateVertexToExtensiveVertex - Class in ch.idsia.crema.factor.convert
SeparateVertexToExtensiveVertex() - Constructor for class ch.idsia.crema.factor.convert.SeparateVertexToExtensiveVertex
separation(Strides) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
separation(Strides) - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactorFactory
separator(int, int) - Method in class ch.idsia.crema.inference.fe.EliminationTree: A separator defines a set of variables for each edge in an elimination tree.
separators - Variable in class ch.idsia.crema.inference.bp.BeliefPropagation
SePolyController - Class in ch.idsia.crema.inference.sepolyve
SePolyController(GraphicalModel<VertexFactor>, TIntIntMap) - Constructor for class ch.idsia.crema.inference.sepolyve.SePolyController
SePolyController(GraphicalModel<VertexFactor>, TIntIntMap, SeparateDefaultAlgebra, long, long) - Constructor for class ch.idsia.crema.inference.sepolyve.SePolyController: Search controller with possibility to specify the rounding algebra.
SePolyVE - Class in ch.idsia.crema.inference.sepolyve: Precise Separately specified polytree inference algorithm.
SePolyVE() - Constructor for class ch.idsia.crema.inference.sepolyve.SePolyVE: Construct the algorithm without rounding
SePolyVE(double) - Constructor for class ch.idsia.crema.inference.sepolyve.SePolyVE: Run the algorithm round the factors to the specified tolerance.
serialize() - Method in class ch.idsia.crema.model.io.uai.UAIWriter
serialize(CombinedFactor, StringBuilder) - Method in class ch.idsia.crema.factor.symbolic.serialize.NLSerializer
serialize(FilteredFactor, StringBuilder) - Method in class ch.idsia.crema.factor.symbolic.serialize.NLSerializer
serialize(MarginalizedFactor, StringBuilder) - Method in class ch.idsia.crema.factor.symbolic.serialize.NLSerializer
serialize(PriorFactor, StringBuilder) - Method in class ch.idsia.crema.factor.symbolic.serialize.NLSerializer
serialize(SymbolicFactor, int, boolean) - Method in class ch.idsia.crema.factor.symbolic.serialize.MOD
serialize(SymbolicFactor, int, boolean) - Method in class ch.idsia.crema.factor.symbolic.serialize.NLSerializer
serialize(SymbolicFactor, int, boolean) - Method in interface ch.idsia.crema.factor.symbolic.serialize.SolverSerializer: Serialize the problem to query the bound of the specified variable
set(double[], double[], int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
set(double, double) - Method in class ch.idsia.crema.factor.credal.set.IntervalSet.BoundsHelper
set(double, int...) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
setConditioning(int...) - Method in class ch.idsia.crema.inference.ve.ConditionalVariableElimination
setConstraints(List<LinearConstraint>) - Method in class ch.idsia.crema.factor.credal.set.HCredalSet: Set all Constrints at once.
setController(SearchOperation) - Method in class ch.idsia.crema.search.impl.DepthFirst
setConvexHullMarg(ConvexHull) - Static method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor: Set the convexhull method applied after marginalization.
setConvexHullMarg(ConvexHull) - Method in class ch.idsia.crema.inference.ve.CredalVariableElimination
setCreator(CreateFactor) - Method in class ch.idsia.crema.preprocess.BinarizeEvidence
setData(int[], double[]) - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor: Set the CPT's data specifying a custom ordering used in the data
setDataDomain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
setDomain(Strides) - Method in class ch.idsia.crema.factor.credal.set.AbstractSet
setEliminationSequence(int[]) - Method in class ch.idsia.crema.inference.bp.triangulation.TriangulatedGraph
setEliminationTree(EliminationTree, int) - Method in class ch.idsia.crema.inference.fe.FactorElimination2: Deprecated.
setEvidence(TIntIntMap) - Method in class ch.idsia.crema.inference.fe.EliminationTree
setEvidence(TIntIntMap) - Method in class ch.idsia.crema.inference.fe.FactorElimination: Deprecated.
setEvidence(TIntIntMap) - Method in interface ch.idsia.crema.inference.InferenceCascade: Set the evidence to use in the next queries.
setEvidence(TIntIntMap) - Method in class ch.idsia.crema.inference.ve.VariableElimination: Fix some evidence.
setEvidenceNode(int) - Method in class ch.idsia.crema.inference.approxlp1.ApproxLP1
setF(Function<Integer, Double>) - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
setFactor(int, F) - Method in class ch.idsia.crema.model.graphical.DAGModel
setFactor(int, F) - Method in interface ch.idsia.crema.model.graphical.GraphicalModel
setFactor(BayesianFactor) - Method in class ch.idsia.crema.inference.fe.Node
setFactors(F[]) - Method in class ch.idsia.crema.inference.ve.VariableElimination: Populate the problem with the factors to be considered.
setFactors(F[]) - Method in class ch.idsia.crema.model.graphical.DAGModel
setFactors(F[]) - Method in interface ch.idsia.crema.model.Model: Specify all the factor of the model via a single array.
setFactors(Collection<? extends F>) - Method in class ch.idsia.crema.inference.ve.VariableElimination: Populate the problem with the factors to be considered.
setFree(int) - Method in class ch.idsia.crema.inference.approxlp1.Move
setFree(int) - Method in class ch.idsia.crema.inference.approxlp2.Move
setGroupDomain(Strides) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
setInference(Inference<GraphicalModel<BayesianFactor>, BayesianFactor>) - Method in class ch.idsia.crema.inference.approxlp0.ApproxLP0
setInferenceEngine(InferenceJoined<GraphicalModel<F>, F>) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setInline(boolean) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setInput(CliqueSet) - Method in class ch.idsia.crema.inference.bp.join.JoinTreeBuilder
setInput(JoinTree) - Method in class ch.idsia.crema.inference.bp.junction.JunctionTreeBuilder
setInput(TriangulatedGraph) - Method in class ch.idsia.crema.inference.bp.cliques.FindCliques
setInput(DAGModel<F>) - Method in class ch.idsia.crema.inference.bp.moralization.Moralize
setInput(F) - Method in interface ch.idsia.crema.inference.Algorithm
setInput(F) - Method in class ch.idsia.crema.inference.Pipe
setInput(SimpleGraph<Integer, DefaultEdge>) - Method in class ch.idsia.crema.inference.bp.triangulation.Triangulate
setIntegerOption(String, int) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Function for setting an integer option.
setIterations(int) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
setIterations(long) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling
setKlthreshold(double) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setLog(boolean) - Method in class ch.idsia.crema.factor.convert.HalfspaceToRandomBayesianFactor
setLog(boolean) - Method in class ch.idsia.crema.factor.convert.SeparateLinearToRandomBayesian
setLog(boolean) - Method in class ch.idsia.crema.factor.convert.VertexToRandomBayesian
setLowers(double[]) - Method in class ch.idsia.crema.factor.credal.set.IntervalSet
setMax(int) - Method in class ch.idsia.crema.preprocess.LimitVertices
setMaxIteration(int) - Method in class ch.idsia.crema.search.impl.RandomWalk
setModel(TriangulatedGraph) - Method in class ch.idsia.crema.inference.bp.cliques.CliqueSet
setModel(M) - Method in interface ch.idsia.crema.inference.InferenceCascade: Set the model to use in the next queries.
setModel(M, TIntIntMap) - Method in interface ch.idsia.crema.inference.InferenceCascade: Set the model to use in the next queries.
setN(int) - Method in class ch.idsia.crema.inference.approxlp0.ApproxLP0
setNeighbourhoodFunction(NeighbourhoodFunction<M, S>) - Method in class ch.idsia.crema.search.impl.AbstractSearch
setNeighbourhoodFunction(NeighbourhoodFunction<M, S>) - Method in interface ch.idsia.crema.search.ISearch: This method set the neighbourhood function that the search algorithm should use.
setNode(int) - Method in class ch.idsia.crema.inference.sepolyve.NodeInfo
setNormalize(boolean) - Method in class ch.idsia.crema.inference.ve.VariableElimination: Specify if the resulting value should be normalized.
setNumericOption(String, double) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Function for setting a number option.
setNumPoints(int) - Method in class ch.idsia.crema.utility.hull.ReducedHull: Set the number of points
setObjectiveFunction(ObjectiveFunction<M, S>) - Method in class ch.idsia.crema.search.impl.AbstractSearch
setObjectiveFunction(ObjectiveFunction<M, S>) - Method in interface ch.idsia.crema.search.ISearch: This method tells the search algorithm about the objective function to be used to evaluate a move on a solution.
setOffset(int) - Method in class ch.idsia.crema.model.io.uai.UAIParser
setPerformedIterations(int) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setPreprocess(boolean) - Method in class ch.idsia.crema.inference.approxlp0.ApproxLP0
setPreprocess(boolean) - Method in class ch.idsia.crema.inference.approxlp1.ApproxLP1
setPreprocess(boolean) - Method in class ch.idsia.crema.inference.approxlp2.ApproxLP2
setPreprocess(Boolean) - Method in class ch.idsia.crema.inference.bp.BeliefPropagation
setPreprocess(Boolean) - Method in class ch.idsia.crema.inference.bp.LoopyBeliefPropagation
setPreprocess(Boolean) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling
setRandom(Supplier<Random>) - Static method in class ch.idsia.crema.utility.RandomUtil: Change the current RandomUtil.supplier function with a new one.
setRandom(Random) - Static method in class ch.idsia.crema.utility.RandomUtil: Set a new RandomUtil.random object to use and reset the supplier function to the original one.
setRandomSeed(long) - Static method in class ch.idsia.crema.utility.RandomUtil: Change the current RandomUtil.random object with a new random initialized with the given seed.
setRecordIntermediate(boolean) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setRegularization(double) - Method in class ch.idsia.crema.learning.FrequentistEM
setRoot(int) - Method in class ch.idsia.crema.inference.fe.EliminationTree: Update the message mechanism by changing the root node.
setRoot(int) - Method in class ch.idsia.crema.inference.fe.FactorElimination: Deprecated.
setScore(double) - Method in class ch.idsia.crema.inference.approxlp1.Move
setScore(double) - Method in class ch.idsia.crema.inference.approxlp2.Move
setSeed(long) - Method in class ch.idsia.crema.search.impl.RandomWalk
setSequence(int[]) - Method in class ch.idsia.crema.inference.bp.cliques.FindCliques
setSequence(int[]) - Method in class ch.idsia.crema.inference.ve.VariableElimination: Set the elimination sequence to be used.
setSimplex(boolean) - Method in class ch.idsia.crema.utility.hull.QuickHull
setSize(int) - Method in class ch.idsia.crema.preprocess.BinarizeEvidence
setStages(List<Algorithm>) - Method in class ch.idsia.crema.inference.Pipe
setStats(IStats<M>) - Method in class ch.idsia.crema.search.impl.AbstractSearch
setStats(IStats<M>) - Method in interface ch.idsia.crema.search.IStatCapable
setSteps(int) - Method in class ch.idsia.crema.search.impl.AbstractSearch
setStop(AtomicBoolean) - Method in class ch.idsia.crema.search.impl.AbstractSearch
setStop(AtomicBoolean) - Method in interface ch.idsia.crema.search.ISearch: Set the atomic boolean to be used to notify the searcher that we want to stop.
setStopAtConvergence(boolean) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setStringOption(String, String) - Method in class ch.idsia.crema.solver.ipopt.Ipopt: Function for setting a string option.
setTime(long) - Method in class ch.idsia.crema.inference.sepolyve.NodeInfo
setTrainableVars(int[]) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setTree(EliminationTree) - Method in class ch.idsia.crema.inference.fe.FactorElimination: Deprecated.
setUpdated(boolean) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setUppers(double[]) - Method in class ch.idsia.crema.factor.credal.set.IntervalSet
setValue(int) - Method in class ch.idsia.crema.utility.SeparateIndexIterator
setValues(BayesianFactor) - Method in class ch.idsia.crema.inference.approxlp1.Move
setValues(BayesianFactor) - Method in class ch.idsia.crema.inference.approxlp2.Move
setVarNames(String...) - Method in class ch.idsia.crema.data.WriterCSV
setVerbose(boolean) - Method in class ch.idsia.crema.learning.ExpectationMaximization
setVertex(double[]) - Method in class ch.idsia.crema.factor.credal.set.Precise
setVerticesIn(long) - Method in class ch.idsia.crema.inference.sepolyve.NodeInfo
setVerticesOut(long) - Method in class ch.idsia.crema.inference.sepolyve.NodeInfo
shuffle(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil
shuffle(int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil
SimpleBayesianFilter - Class in ch.idsia.crema.factor.algebra.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 21:21
SimpleBayesianFilter(int, int) - Constructor for class ch.idsia.crema.factor.algebra.bayesian.SimpleBayesianFilter
SimpleBayesianMarginal - Class in ch.idsia.crema.factor.algebra.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 21:23
SimpleBayesianMarginal(int, int) - Constructor for class ch.idsia.crema.factor.algebra.bayesian.SimpleBayesianMarginal
SimpleBayesianOperation<F extends BayesianFactor> - Class in ch.idsia.crema.factor.algebra.bayesian: Author: Claudio "Dna" Bonesana Project: crema Date: 21.04.2021 18:57
SimpleBayesianOperation() - Constructor for class ch.idsia.crema.factor.algebra.bayesian.SimpleBayesianOperation
SimpleDomain - Class in ch.idsia.crema.core: Domain implementation that does not include strides.
SimpleDomain(int[], int[]) - Constructor for class ch.idsia.crema.core.SimpleDomain
SimpleDomain(Domain) - Constructor for class ch.idsia.crema.core.SimpleDomain
SimpleVertexOperation - Class in ch.idsia.crema.factor.algebra.vertex
SimpleVertexOperation() - Constructor for class ch.idsia.crema.factor.algebra.vertex.SimpleVertexOperation
Simplex - Class in ch.idsia.crema.solver.commons: An implementation of the LinearSolver interface based on apache's SimplexSolver.
Simplex - Class in ch.idsia.crema.solver.lpsolve
Simplex() - Constructor for class ch.idsia.crema.solver.commons.Simplex
Simplex() - Constructor for class ch.idsia.crema.solver.lpsolve.Simplex
simulateBN(GraphicalModel<BayesianFactor>, TIntIntMap) - Method in class ch.idsia.crema.inference.sampling.StochasticSampling: Algorithm 44 from "Modeling and Reasoning with BN", Dawiche, p.380
size - Variable in class ch.idsia.crema.preprocess.creators.Instance
size() - Method in class ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexDefaultFactor
size() - Method in interface ch.idsia.crema.factor.credal.vertex.extensive.ExtensiveVertexFactor
size() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
size() - Method in interface ch.idsia.crema.factor.credal.vertex.separate.VertexFactor
size() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
size() - Method in class ch.idsia.crema.inference.fe.EliminationTree
size() - Method in class ch.idsia.crema.utility.CombinationsIterator
size(int...) - Method in class ch.idsia.crema.core.DomainBuilder
slice(double[], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil
slice(int[], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil
sliceColumns(double[][], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil
sliceRows(double[][], int...) - Static method in class ch.idsia.crema.utility.ArraysUtil
Solution - Class in ch.idsia.crema.inference.approxlp1
Solution - Class in ch.idsia.crema.inference.approxlp2
solve(double[], double) - Method in class ch.idsia.crema.solver.commons.Simplex
solve(double[], double) - Method in interface ch.idsia.crema.solver.LinearSolver: Start the solver with the specified objective function and constant term
solve(double[], double) - Method in class ch.idsia.crema.solver.lpsolve.Simplex
solve(double[], double[], double) - Method in class ch.idsia.crema.solver.commons.FractionalSolver
solve(double[], double, double[], double) - Method in class ch.idsia.crema.solver.commons.FractionalSolver
solve(double[], double, double[], double) - Method in interface ch.idsia.crema.solver.LinearFractionalSolver
solve(double[], double, double[], double, double) - Method in class ch.idsia.crema.solver.commons.FractionalSolver
solve(double[], double, double[], double, double) - Method in interface ch.idsia.crema.solver.LinearFractionalSolver
SOLVE_SUCCEEDED - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt: The possible Ipopt status return codes: should be kept in sync with Ipopt return codes
SolverFactory - Class in ch.idsia.crema.solver
SolverFactory() - Constructor for class ch.idsia.crema.solver.SolverFactory
SolverSerializer - Interface in ch.idsia.crema.factor.symbolic.serialize
sort() - Method in class ch.idsia.crema.core.Strides: Return a new Stride sorted by the variables.
sort(int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Non inline ordering of integer array
sortParents() - Method in class ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceDefaultFactor: Sorts the parents following the global variable order
sortParents() - Method in interface ch.idsia.crema.factor.credal.linear.separate.SeparateHalfspaceFactor
stages - Variable in class ch.idsia.crema.inference.Pipe
states(int...) - Method in class ch.idsia.crema.core.ObservationBuilder
statesOf(int) - Method in class ch.idsia.crema.core.Strides
stats - Variable in class ch.idsia.crema.search.impl.AbstractSearch
step() - Method in class ch.idsia.crema.search.impl.AbstractSearch: Performs a single step in the search.
step() - Method in class ch.idsia.crema.search.impl.Greedy
step() - Method in class ch.idsia.crema.search.impl.GreedyWithRandomRestart
step() - Method in class ch.idsia.crema.search.impl.LocalSearch
step() - Method in class ch.idsia.crema.search.impl.RandomWalk
step(Collection<TIntIntMap>) - Method in class ch.idsia.crema.learning.ExpectationMaximization
stepPrivate(Collection<TIntIntMap>) - Method in class ch.idsia.crema.learning.ExpectationMaximization
stepPrivate(Collection<TIntIntMap>) - Method in class ch.idsia.crema.learning.FrequentistEM
StochasticSampling - Class in ch.idsia.crema.inference.sampling: Author: Claudio "Dna" Bonesana Project: CreMA Date: 02.02.2018 09:17
StochasticSampling() - Constructor for class ch.idsia.crema.inference.sampling.StochasticSampling
StochasticSampling(long) - Constructor for class ch.idsia.crema.inference.sampling.StochasticSampling
StochasticSampling(long, Boolean) - Constructor for class ch.idsia.crema.inference.sampling.StochasticSampling
StochasticSampling(Boolean) - Constructor for class ch.idsia.crema.inference.sampling.StochasticSampling
stopAtConvergence - Variable in class ch.idsia.crema.learning.ExpectationMaximization
stopFlag - Variable in class ch.idsia.crema.search.impl.AbstractSearch
str(double...) - Method in class ch.idsia.crema.model.io.uai.UAIWriter
str(int...) - Method in class ch.idsia.crema.model.io.uai.UAIWriter
str(String...) - Method in class ch.idsia.crema.model.io.uai.UAIWriter
strengths - Variable in class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor: Noise activators.
strides() - Method in class ch.idsia.crema.core.DomainBuilder
Strides - Class in ch.idsia.crema.core: An implementation of the domain that stores also the strides of the variables.
Strides(int[], int[]) - Constructor for class ch.idsia.crema.core.Strides: create the domain based on the list of variables and their cardinality
Strides(int[], int[], int[]) - Constructor for class ch.idsia.crema.core.Strides
Strides(Strides, int) - Constructor for class ch.idsia.crema.core.Strides: Deprecated.
please use Strides.removeAt(int...)
sumLogProb(TIntIntMap[]) - Method in class ch.idsia.crema.model.graphical.BayesianNetwork
swapVectorStrides(double[], int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Given a vector representing a multidimensional array, swaps the axis.
SymbolicAbstractFactor - Class in ch.idsia.crema.factor.symbolic
SymbolicAbstractFactor(Strides) - Constructor for class ch.idsia.crema.factor.symbolic.SymbolicAbstractFactor
SymbolicExecution<F extends OperableFactor<F>> - Class in ch.idsia.crema.factor.symbolic.serialize: Author: Claudio "Dna" Bonesana Project: crema Date: 28.04.2021 17:19
SymbolicExecution(Operation<F>) - Constructor for class ch.idsia.crema.factor.symbolic.serialize.SymbolicExecution
SymbolicFactor - Interface in ch.idsia.crema.factor.symbolic: Author: Claudio "Dna" Bonesana Project: crema Date: 28.04.2021 15:04
symmetricDiff(int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Find the sorted symmetric difference of two non-sorted integer arrays.

T

target - Variable in class ch.idsia.crema.model.io.uai.UAIWriter
toArray() - Method in class ch.idsia.crema.utility.IndexIterator
toDoubles(TIntIntMap[], int...) - Static method in class ch.idsia.crema.core.ObservationBuilder
toIntArray(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil: cast a 2d array of doubles into one of ints
toIntVector(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: cast a 1d array of doubles into one of ints
toLatex(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Generates the latex source for representing a 2d array.
TopologicalOrder - Class in ch.idsia.crema.inference.ve.order
TopologicalOrder() - Constructor for class ch.idsia.crema.inference.ve.order.TopologicalOrder
TopologicalOrder2 - Class in ch.idsia.crema.inference.ve.order
TopologicalOrder2() - Constructor for class ch.idsia.crema.inference.ve.order.TopologicalOrder2
TopologicalOrdering - Class in ch.idsia.crema.inference.ve.order
TopologicalOrdering() - Constructor for class ch.idsia.crema.inference.ve.order.TopologicalOrdering
toString() - Method in class ch.idsia.crema.core.Strides
toString() - Method in class ch.idsia.crema.factor.bayesian.BayesianAbstractFactor
toString() - Method in class ch.idsia.crema.factor.bayesian.BayesianAndFactor
toString() - Method in class ch.idsia.crema.factor.bayesian.BayesianDefaultFactor
toString() - Method in class ch.idsia.crema.factor.bayesian.BayesianFunctionFactor
toString() - Method in class ch.idsia.crema.factor.bayesian.BayesianNoisyOrFactor
toString() - Method in class ch.idsia.crema.factor.bayesian.BayesianNotFactor
toString() - Method in class ch.idsia.crema.factor.bayesian.BayesianOrFactor
toString() - Method in class ch.idsia.crema.factor.convert.ConverterFactory
toString() - Method in class ch.idsia.crema.factor.credal.linear.extensive.ExtensiveHalfspaceFactor
toString() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalAbstractFactor
toString() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
toString() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
toString() - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
toString() - Method in class ch.idsia.crema.factor.symbolic.CombinedFactor
toString() - Method in class ch.idsia.crema.factor.symbolic.DividedFactor
toString() - Method in class ch.idsia.crema.factor.symbolic.FilteredFactor
toString() - Method in class ch.idsia.crema.factor.symbolic.MarginalizedFactor
toString() - Method in class ch.idsia.crema.factor.symbolic.NormalizedFactor
toString() - Method in class ch.idsia.crema.factor.symbolic.PriorFactor
toString() - Method in class ch.idsia.crema.factor.VoidFactor
toString() - Method in class ch.idsia.crema.inference.approxlp1.Move
toString() - Method in class ch.idsia.crema.inference.approxlp2.Move
toString() - Method in class ch.idsia.crema.inference.bp.cliques.Clique
toString() - Method in class ch.idsia.crema.inference.fe.Node
toString() - Method in class ch.idsia.crema.model.graphical.DAGModel
toString() - Method in enum ch.idsia.crema.model.io.uai.UAITypes
toString() - Method in class ch.idsia.crema.solver.commons.FractionalSolver
toString() - Method in class ch.idsia.crema.utility.VertexPair
trainableVars - Variable in class ch.idsia.crema.learning.ExpectationMaximization
TransformerEvidence<F extends GenericFactor,M extends GraphicalModel<F>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 16:29
TransformerModel<F extends GenericFactor,M extends GraphicalModel<F>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 16:29
TransformerQuery<F extends GenericFactor,M extends GraphicalModel<F>> - Interface in ch.idsia.crema.preprocess: Author: Claudio "Dna" Bonesana Project: crema Date: 09.03.2021 16:29
transpose(double[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Transpose of a 2d matrix
transpose(int[][]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Transpose of a 2d matrix
Triangulate - Class in ch.idsia.crema.inference.bp.triangulation: Author: Claudio "Dna" Bonesana Project: CreMA Date: 12.02.2018 11:34
Triangulate() - Constructor for class ch.idsia.crema.inference.bp.triangulation.Triangulate
triangulated - Variable in class ch.idsia.crema.inference.bp.triangulation.Triangulate
TriangulatedGraph - Class in ch.idsia.crema.inference.bp.triangulation: Author: Claudio "Dna" Bonesana Project: crema Date: 13.11.2020 14:49
TriangulatedGraph() - Constructor for class ch.idsia.crema.inference.bp.triangulation.TriangulatedGraph
trueState - Variable in class ch.idsia.crema.factor.bayesian.BayesianNotFactor: Value of the TRUE state for each parent.
trueStates - Variable in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: Value of the TRUE state for each parent.
tryParse(Object, double) - Static method in class ch.idsia.crema.search.impl.Utils
tryParse(Object, float) - Static method in class ch.idsia.crema.search.impl.Utils
tryParse(Object, int) - Static method in class ch.idsia.crema.search.impl.Utils
tryParse(Object, long) - Static method in class ch.idsia.crema.search.impl.Utils
TYPE - Variable in class ch.idsia.crema.model.io.uai.UAIParser
TYPE - Variable in class ch.idsia.crema.model.io.uai.UAIWriter
TypesIO - Interface in ch.idsia.crema.model.io

U

UAIextensions - Static variable in class ch.idsia.crema.IO
UAIParser<T> - Class in ch.idsia.crema.model.io.uai: Generic parser class for UAI format
UAIParser(String) - Constructor for class ch.idsia.crema.model.io.uai.UAIParser
UAIParser(List<String>) - Constructor for class ch.idsia.crema.model.io.uai.UAIParser
UAITypes - Enum in ch.idsia.crema.model.io.uai
UAIWriter<T> - Class in ch.idsia.crema.model.io.uai
UAIWriter(T, String) - Constructor for class ch.idsia.crema.model.io.uai.UAIWriter
union(int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Union of two sorted arrays.
union(Strides) - Method in class ch.idsia.crema.core.Strides: Create a new Strides result of the union of domain1 and domain2.
unionSet(int[], int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Union of 2 unsorted arrays without repetition
unique(double[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Generates a new vector without repeated values
unique(int[]) - Static method in class ch.idsia.crema.utility.ArraysUtil: Generates a new vector without repeated values
UNRECOVERABLE_EXCEPTION - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
updated - Variable in class ch.idsia.crema.learning.ExpectationMaximization
updateReachability() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
updateReachability() - Method in interface ch.idsia.crema.factor.credal.linear.interval.IntervalFactor
updateReachability() - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalLogFactor
upper - Variable in class ch.idsia.crema.factor.credal.linear.interval.IntervalDefaultFactor
upper(double[], int...) - Method in class ch.idsia.crema.factor.credal.linear.interval.IntervalFactorFactory
USER_REQUESTED_STOP - Static variable in class ch.idsia.crema.solver.ipopt.Ipopt
Utils - Class in ch.idsia.crema.search.impl
Utils() - Constructor for class ch.idsia.crema.search.impl.Utils

V

value() - Method in class ch.idsia.crema.utility.SeparateIndexIterator
value(double, int...) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
valueAt(double, int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
valueOf(String) - Static method in enum ch.idsia.crema.model.io.uai.UAITypes: Returns the enum constant of this type with the specified name.
valueOfLabel(String) - Static method in enum ch.idsia.crema.model.io.uai.UAITypes
values() - Static method in enum ch.idsia.crema.model.io.uai.UAITypes: Returns an array containing the constants of this enum type, in the order they are declared.
valuesAt(double[], int) - Method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory
var(int...) - Static method in class ch.idsia.crema.core.DomainBuilder
var(int, int) - Static method in class ch.idsia.crema.core.Strides: Define a stride as a sequence of variable/size pairs
variable - Variable in class ch.idsia.crema.factor.bayesian.BayesianLogicFactor: Variables defined on this factor (not parents).
variable - Variable in class ch.idsia.crema.factor.bayesian.BayesianNotFactor: Variables defined on this factor (not parents).
variable - Variable in class ch.idsia.crema.preprocess.creators.Instance
VariableElimination<F extends OperableFactor<F>> - Class in ch.idsia.crema.inference.ve
VariableElimination(Operation<F>) - Constructor for class ch.idsia.crema.inference.ve.VariableElimination: Constructs a variable elimination specifying the algebra.
VariableElimination(Operation<F>, int[]) - Constructor for class ch.idsia.crema.inference.ve.VariableElimination: Constructs a variable elimination specifying the algebra to be used for the factors and the elimination order
variableFactors - Variable in class ch.idsia.crema.model.io.bif.BIFObject
variableName - Variable in class ch.idsia.crema.model.io.bif.BIFObject
variableStates - Variable in class ch.idsia.crema.model.io.bif.BIFObject
vars() - Method in class ch.idsia.crema.inference.fe.EliminationTree
vars() - Method in class ch.idsia.crema.inference.fe.Node
vars(int) - Method in class ch.idsia.crema.inference.fe.EliminationTree
vars(int...) - Static method in class ch.idsia.crema.core.ObservationBuilder
VCREDAL - ch.idsia.crema.model.io.uai.UAITypes
VCredalUAIParser - Class in ch.idsia.crema.model.io.uai: Parser for V-CREDAL networks in UAI format
VCredalUAIParser(String) - Constructor for class ch.idsia.crema.model.io.uai.VCredalUAIParser
VCredalUAIParser(List<String>) - Constructor for class ch.idsia.crema.model.io.uai.VCredalUAIParser
VCredalUAIWriter - Class in ch.idsia.crema.model.io.uai
VCredalUAIWriter(DAGModel<VertexFactor>, String) - Constructor for class ch.idsia.crema.model.io.uai.VCredalUAIWriter
verbose - Variable in class ch.idsia.crema.learning.ExpectationMaximization
VertexAbstractFactor - Class in ch.idsia.crema.factor.credal.vertex.separate: A Separately specified Vertex based credal factor.
VertexAbstractFactor(Strides, Strides) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
VertexDefaultFactor - Class in ch.idsia.crema.factor.credal.vertex.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 21:45
VertexDefaultFactor(Strides, double[][], double[], Relationship...) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
VertexDefaultFactor(Strides, Strides, double[][][]) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
VertexDefaultFactor(Strides, Strides, List<double[]>, TIntList) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
VertexDefaultFactor(SeparateHalfspaceFactor) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexDefaultFactor
VertexDeterministicFactor - Class in ch.idsia.crema.factor.credal.vertex.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 21:46
VertexDeterministicFactor(Strides, Strides, List<double[]>, TIntList) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexDeterministicFactor
vertexDomain - Variable in class ch.idsia.crema.factor.credal.vertex.separate.VertexAbstractFactor
vertexDomain(Strides) - Method in class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorFactory
VertexFactor - Interface in ch.idsia.crema.factor.credal.vertex.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 17.03.2021 13:19
VertexFactorFactory - Class in ch.idsia.crema.factor.credal.vertex.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 19.04.2021 14:41
VertexFactorUtilities - Class in ch.idsia.crema.factor.credal.vertex.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 22:18
VertexFactorUtilities() - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexFactorUtilities
VertexFunctionFactor - Class in ch.idsia.crema.factor.credal.vertex.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 21:49
VertexFunctionFactor(Strides, Strides, Function<Integer, double[][]>) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexFunctionFactor
VertexHashStrategy - Class in ch.idsia.crema.factor.algebra.vertex
VertexHashStrategy() - Constructor for class ch.idsia.crema.factor.algebra.vertex.VertexHashStrategy
VertexLogFactor - Class in ch.idsia.crema.factor.credal.vertex.separate: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 21:46
VertexLogFactor(Strides, Strides, double[][][]) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexLogFactor
VertexLogFactor(VertexDefaultFactor) - Constructor for class ch.idsia.crema.factor.credal.vertex.separate.VertexLogFactor
VertexNetworkSampling - Class in ch.idsia.crema.inference.sampling: Author: Claudio "Dna" Bonesana Project: crema Date: 27.11.2020 16:55
VertexNetworkSampling() - Constructor for class ch.idsia.crema.inference.sampling.VertexNetworkSampling
VertexOperation - Interface in ch.idsia.crema.factor.algebra.vertex
VertexPair<V> - Class in ch.idsia.crema.utility: Author: Claudio "Dna" Bonesana Project: CreMA Date: 12.02.2018 14:21
VertexPair(V, V) - Constructor for class ch.idsia.crema.utility.VertexPair
VertexSet - Class in ch.idsia.crema.factor.credal.set
VertexSet() - Constructor for class ch.idsia.crema.factor.credal.set.VertexSet
VertexToInterval - Class in ch.idsia.crema.factor.convert: Convert from VertexFactor to IntervalFactor
VertexToInterval() - Constructor for class ch.idsia.crema.factor.convert.VertexToInterval
VertexToRandomBayesian - Class in ch.idsia.crema.factor.convert: Author: Claudio "Dna" Bonesana Project: crema Date: 18.08.2021 13:44
VertexToRandomBayesian() - Constructor for class ch.idsia.crema.factor.convert.VertexToRandomBayesian
VerticesModel - Class in ch.idsia.crema.model.graphical: Author: Claudio "Dna" Bonesana Project: crema Date: 16.04.2021 22:24
VerticesModel() - Constructor for class ch.idsia.crema.model.graphical.VerticesModel
visit(int...) - Method in class ch.idsia.crema.search.impl.DepthFirst
visitChildren(int) - Method in class ch.idsia.crema.search.SearchOperation
visitParents(int) - Method in class ch.idsia.crema.search.SearchOperation
VoidChange<F extends GenericFactor> - Class in ch.idsia.crema.model.change
VoidChange() - Constructor for class ch.idsia.crema.model.change.VoidChange
VoidFactor - Class in ch.idsia.crema.factor
VoidFactor(Strides, long) - Constructor for class ch.idsia.crema.factor.VoidFactor

W

where(double[], Predicate<Double>) - Static method in class ch.idsia.crema.utility.ArraysUtil
where(int[], Predicate<Integer>) - Static method in class ch.idsia.crema.utility.ArraysUtil
where(String[], Predicate<String>) - Static method in class ch.idsia.crema.utility.ArraysUtil
withHeader(boolean) - Method in class ch.idsia.crema.data.ReaderCSV
withIndex(boolean) - Method in class ch.idsia.crema.data.WriterCSV
withSeparator(char) - Method in class ch.idsia.crema.data.ReaderCSV
withSeparator(char) - Method in class ch.idsia.crema.data.WriterCSV
write() - Method in class ch.idsia.crema.data.WriterCSV
write() - Method in class ch.idsia.crema.model.io.uai.UAIWriter
write(Object, String) - Static method in class ch.idsia.crema.model.io.uai.UAIWriter
write(T, String) - Static method in class ch.idsia.crema.IO
writeDomains() - Method in class ch.idsia.crema.model.io.uai.BayesUAIWriter
writeDomains() - Method in class ch.idsia.crema.model.io.uai.NetUAIWriter
writeFactors() - Method in class ch.idsia.crema.model.io.uai.BayesUAIWriter
writeFactors() - Method in class ch.idsia.crema.model.io.uai.HCredalUAIWriter
writeFactors() - Method in class ch.idsia.crema.model.io.uai.NetUAIWriter
writeFactors() - Method in class ch.idsia.crema.model.io.uai.VCredalUAIWriter
WriterCSV - Class in ch.idsia.crema.data
WriterCSV(double[][], String) - Constructor for class ch.idsia.crema.data.WriterCSV
WriterCSV(int[][], String) - Constructor for class ch.idsia.crema.data.WriterCSV
writeTarget() - Method in class ch.idsia.crema.model.io.uai.BayesUAIWriter
writeTarget() - Method in class ch.idsia.crema.model.io.uai.HCredalUAIWriter
writeTarget() - Method in class ch.idsia.crema.model.io.uai.UAIWriter
writeTarget() - Method in class ch.idsia.crema.model.io.uai.VCredalUAIWriter
writeToFile() - Method in class ch.idsia.crema.model.io.uai.UAIWriter
writeType() - Method in class ch.idsia.crema.model.io.uai.UAIWriter
writeUAI(T, String) - Static method in class ch.idsia.crema.IO
writeVariablesInfo() - Method in class ch.idsia.crema.model.io.uai.NetUAIWriter

X

XMLBIFParser - Class in ch.idsia.crema.model.io.bif: parser for the XMLBIF format (http://www.cs.cmu.edu/~fgcozman/Research/InterchangeFormat/)
XMLBIFParser() - Constructor for class ch.idsia.crema.model.io.bif.XMLBIFParser

Z

zero(int) - Static method in class ch.idsia.crema.factor.bayesian.BayesianFactorFactory

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